DESCRIPTION

Package: hlabud
Title: Methods for Access and Analysis of the Human Leukocyte Antigen (HLA) Gene Sequence Alignments from IMGTHLA
Version: 2.0.0
Authors@R: c(
    person("Kamil", "Slowikowski", email = "kslowikowski@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-2843-6370"))
    )
Description: Fetch sequence alignment data from the IMGTHLA database by Robinson et al (2020) <doi:10.1093/nar/gkz950>, automatically convert the sequence alignments into convenient R matrices ready for downstream analysis. The vignette shows examples of using the one-hot encoding of the data with logistic regression and dimensionality reduction. Data is downloaded lazily, as-needed, and cached in a user-configurable folder. 
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/slowkow/hlabud, https://slowkow.github.io/hlabud/
BugReports: https://github.com/slowkow/hlabud/issues
Depends: 
    R (>= 2.10)
LazyData: true
Imports: 
    curl,
    dplyr,
    glue,
    jsonlite,
    magrittr,
    onehot,
    rappdirs,
    rlang,
    stats,
    stringr,
    tibble,
    tidyr
Suggests: 
    data.table,
    ggplot2,
    ggrepel,
    ggstance,
    knitr,
    NGLVieweR,
    parameters,
    pbapply,
    prettydoc,
    readr,
    rmarkdown,
    scales,
    testthat (>= 3.0.0),
    uwot
Config/testthat/edition: 3