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lfric_test.yml
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# -----------------------------------------------------------------------------
# BSD 3-Clause License
#
# Copyright (c) 2023, Science and Technology Facilities Council.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# * Neither the name of the copyright holder nor the names of its
# contributors may be used to endorse or promote products derived from
# this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
# -----------------------------------------------------------------------------
# Author S. Siso, STFC Daresbury Lab
# This workflow will use a self-hosted runner to perform the more expensive
# integrations tests that are not run on GHA systems.
name: LFRic Integration Tests
on:
push
jobs:
run_if_on_mirror:
if: ${{ github.repository == 'stfc/PSyclone-mirror' }}
runs-on: self-hosted
env:
LFRIC_REV: 45376
PYTHON_VERSION: 3.12.1
steps:
- uses: actions/checkout@v3
with:
submodules: recursive
# This is required to get the commit history for merge commits for
# the ci-skip check below.
fetch-depth: '0'
- name: Check for [skip ci] in commit message
uses: mstachniuk/ci-skip@v1
with:
# This setting causes the tests to 'fail' if [skip ci] is specified
fail-fast: true
commit-filter: '[skip ci]'
- name: Install dependencies
run: |
# Use a specific version of Python (rather than the system-wide one).
module load python/${PYTHON_VERSION}
python -m venv .runner_venv
. .runner_venv/bin/activate
python -m pip install --upgrade pip
pip install external/fparser
pip install .[test]
pip install jinja2
# PSyclone, compile and run MetOffice LFRic with 6 MPI ranks
- name: LFRic passthrough (with DistributedMemory)
run: |
# Set up environment
source /apps/spack/spack-repo/share/spack/setup-env.sh
spack env activate lfric-gnu
export FC="gfortran"
export CC="gcc"
export CXX="g++"
export FPP="cpp -traditional-cpp"
export LDMPI="mpif90"
export FFLAGS="-I$(spack location -e lfric-gnu)/.spack-env/view/include"
export LDFLAGS="-L$(spack location -e lfric-gnu)/.spack-env/view/lib"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(spack location -e lfric-gnu)/.spack-env/view/lib"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(spack location -e lfric-gnu)/.spack-env/view/lib64"
source .runner_venv/bin/activate
export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts
export MINIAPP_DIR=${HOME}/LFRic_${LFRIC_REV}/miniapps/gungho_model
export PSYCLONE_CONFIG=${HOME}/lfric_psyclone_config.cfg
cd ${MINIAPP_DIR}
# Compile
make clean
make -j 6 build
# Run
cd example
cp ${HOME}/lfric_gunho_configuration_4its.nml configuration.nml
mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt
python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${HOME}/lfric_gunho_configuration_4its_output.txt output.txt
cat timer.txt
export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5)
export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5)
echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_passthrough_performance_history
- name: Upload LFRic passthrough results
uses: exuanbo/actions-deploy-gist@v1
with:
token: ${{ secrets.GIST_TOKEN }}
gist_id: a4049a0fc0a0a11651a5ce6a04d76160
file_path: ../../../../store_results/lfric_passthrough_performance_history
# PSyclone, compile and run MetOffice LFRic with all optimisations and 6 OpenMP threads
- name: LFRic with all transformations
run: |
# Set up environment
source /apps/spack/spack-repo/share/spack/setup-env.sh
spack env activate lfric-gnu
export FC="gfortran"
export CC="gcc"
export CXX="g++"
export FPP="cpp -traditional-cpp"
export LDMPI="mpif90"
export FFLAGS="-I$(spack location -e lfric-gnu)/.spack-env/view/include"
export LDFLAGS="-L$(spack location -e lfric-gnu)/.spack-env/view/lib"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(spack location -e lfric-gnu)/.spack-env/view/lib"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH::$(spack location -e lfric-gnu)/.spack-env/view/lib64"
source .runner_venv/bin/activate
export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts
export MINIAPP_DIR=${HOME}/LFRic_${LFRIC_REV}/miniapps/gungho_model
export PSYCLONE_CONFIG=${HOME}/lfric_psyclone_config.cfg
cd ${MINIAPP_DIR}
# Prepare script (LFRics expects a folder with a global.py)
mkdir -p psyclone-test
cp ${PSYCLONE_LFRIC_DIR}/everything_everywhere_all_at_once.py psyclone-test/global.py
# Compile
make clean
make OPTIMISATION_PATH=${MINIAPP_DIR}/psyclone-test -j 6 build |& tee compiler_output.txt
# Run
cd example
cp ${HOME}/lfric_gunho_configuration_4its.nml configuration.nml
export OMP_NUM_THREADS=6
mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt
python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${HOME}/lfric_gunho_configuration_4its_output.txt output.txt
cat timer.txt
export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5)
export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5)
echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_optimised_performance_history
- name: Upload LFRic optimised results
uses: exuanbo/actions-deploy-gist@v1
with:
token: ${{ secrets.GIST_TOKEN }}
gist_id: a4049a0fc0a0a11651a5ce6a04d76160
file_path: ../../../../store_results/lfric_optimised_performance_history