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config.yaml
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# relative paths from this config
file_path: "data/raw_data_healthcare.csv"
preprocessing_path: "data/preprocessed.csv"
wordcloud_path: "data/wordcloud.csv"
phrase_path: "data/phrase.csv"
sent_phrase_path: "data/sent_analysis.csv"
keywords_output_file_path: "data/data_with_keywords.csv"
similarity_scores_path: "data/topic_similarity_scores"
# list of diseases that should be included, if empty all will be taken into account
diseases:
- "Crohn's Disease"
- "Ulcerative Colitis"
# list of treatments that should be included, if empty all will be taken into account
treatments:
# list of antibodies that should be included, if empty all will be taken into account
antibodies:
# phrase extraction parameters
min_length: 3
max_length: 12
# list of broad topics that should be taken into account
topics:
- "effect"
- "price"
- "frequency"
chron_markers:
price:
cheap: ["save money", "insurance company", "insurance forced", "cheaper"]
expensive: ["expensive", "cost"]
frequency:
available: ["available"]
procedure: ["procedure", "process"]
emergency: ["emergency", "urgent"]
convenient: ["convenient"]
immediately: ["immediately"]
frequency: ["frequency"]
sometimes: ["sometimes"]
normalcy: ["normalcy", "feeling normal", "normal"]
effect:
bleeding: ["bloddy", "bloody nose", "bloody stools", "severe bleeding", "internal bleeding"]
digestive problems: ["stomach pain", "bowel struggles", "bowel", "digestive system", "bowel movement", "constipated", "bloating", "vomiting", "congestion", "much gas", "abdominal cramping", "abdominal pain", "cramping pain", "cramping"]
tiredness: ["fatigue", "extreme fatigue", "severe fatigue", "tiredness", "exhaustion", "zero energy", "always fatigued", "weakness"]
headache: ["severe headache", "headache", "constant headache", "nausea though", "migraine", "lightheaded often", "head kills"]
swelling: ["facial swelling", "swelling", "orofacial granulomatosis", "swelling quickly", "feet swelled"]
body pain: ["body pain", "body ache", "poor body", "slight soreness", "stiffness", "soreness"]
inflammation: ["inflammation marker", "inflammation", "inflamation"]
remission: ["total remission", "full remission", "abated", "remission"]
improvement: ["vast improvement", "significant improvement", "symptom minimal", "symptom improving", "pain relief", "seen relief", "relief", "productive", "much energy", "regained strength"]
effective: ["fantastic result", "good result", "rewarding experience", "effectiveness", "effective", "super effective", "finally work", "medicine work"]
uc_markers:
price:
cheap: ["cheap", "cheaper drug", "insurance cover"]
expensive: ["expensive", "insurance issue", "financial situation", "afford", "cost"]
frequency:
available: ["available"]
procedure: ["procedure", "process"]
emergency: ["emergency", "urgent"]
convenient: ["convenient"]
immediately: ["immediately"]
frequency: ["frequency"]
sometimes: ["sometimes"]
normalcy: ["normalcy", "feeling normal", "normal"]
effect:
bloating: ["cramping", "constipation", "bloating", "bowel infection", "bloated stomach", "vomiting", "pancolitis", "colitis", "ulcerative colitis", "bowel infection", "constant diarrhea", "diarrhea"]
weight loss: ["weight loss", "underweight", "gained weight", "malnutrition", "severely anemic"]
muscle pain: ["muscle ache", "muscle pain", "muscle weakness", "weakness", "muscle fasciculation"]
fatigue: ["extreme fatigue", "chronic fatigue", "serious fatigue", "exhaustion"]
inflammation: ["inflamed", "surprising flare", "massive flare", "active inflammation", "swelling", "severe flare"]
headache: ["terrible headache", "lightheaded", "almost fainting", "drowsiness", "migraine"]
depression: ["depressed", "depression"]
drug works: ["medication work", "drug work", "work better", "work regularly", "medication work", "life changing", "better life", "success", "shown success"]
improvement: ["symptom improved", "relief", "much improved", "partial reduction", "improve", "symptom improving", "definitely better", "actually better", "feeling better", "immediate result", "profound reduction", "partial reduction", "improvement", "significant improvement", "positive effect"]
remission: ["almost eliminated", "curative result", "remission", "totally healthy", "symptom resolve", "complete remission", "full remission", "remission within"]