Need help with netcdf support

[VictorEijkhout]

Bug Report

Description

Cmake command:

++ cmdline='cmake   -B /work/00434/eijkhout/trilinos/build-15.0.0-milan-intel24-impi -S /work/00434/eijkhout/trilinos/trilinos-15.0.0   -D CMAKE_INSTALL_PREFIX:PATH=/work/00434/eijkhout/trilinos/ins
tallation-trilinos-15.0.0-milan-intel24-impi   -D CMAKE_BUILD_TYPE:STRING=RELEASE   -D BUILD_SHARED_LIBS:BOOL=ON   -D CMAKE_COLOR_DIAGNOSTICS=OFF   -D CMAKE_VERBOSE_MAKEFILE=ON   -D Trilinos_VERBOSE
_CONFIGURE=ON     -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF   -D Trilinos_DUMP_PACKAGE_DEPENDENCIES=ON   -D Trilinos_ASSERT_MISSING_PACKAGES=OFF   -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=OFF
-D Trilinos_ENABLE_TESTS:BOOL=OFF   -D Trilinos_ENABLE_EXAMPLES:BOOL=ON   -D Trilinos_ENABLE_Export_Makefiles:BOOL=ON   -D Trilinos_ENABLE_Fortran:BOOL=ON     -D CMAKE_C_COMPILER=mpicc   -D CMAKE_CX
X_COMPILER=mpicxx   -D CMAKE_Fortran_COMPILER=mpif90   -D CMAKE_CXX_STANDARD:STRING=17     -D Trilinos_ENABLE_OpenMP:BOOL=ON     -D TPL_ENABLE_MPI:BOOL=ON   -D MPI_BASE_DIR=/scratch/projects/compile
rs/oneapi_2024.0/mpi/2021.11/intel64   -D MPI_INCLUDE_DIRS=/scratch/projects/compilers/oneapi_2024.0/mpi/2021.11/include   -D MPI_EXEC:FILEPATH='\''/opt/apps/xalt/0.6/bin/ibrun'\''   -D TPL_ENABLE_G
LM=OFF   -D TPL_ENABLE_Matio=OFF     -D TPL_ENABLE_BLAS=ON   -D BLAS_LIBRARY_DIRS:PATH='\''/scratch/projects/compilers/oneapi_2024.0/mkl/2024.0/lib/intel64'\''   -D BLAS_LIBRARY_NAMES:STRING='\''mkl
_intel_lp64;mkl_core;iomp5;pthread'\''   -D BLAS_INCLUDE_DIRS:PATH='\''/scratch/projects/compilers/oneapi_2024.0/mkl/2024.0/include'\''   -D LAPACK_INCLUDE_DIRS:PATH='\''/scratch/projects/compilers/
oneapi_2024.0/mkl/2024.0/include'\''   -D LAPACK_LIBRARY_DIRS:PATH='\''/scratch/projects/compilers/oneapi_2024.0/mkl/2024.0/lib/intel64'\''   -D LAPACK_LIBRARY_NAMES:STRING='\''mkl_intel_lp64;mkl_se
quential;mkl_core;iomp5;pthread'\''     -D TPL_ENABLE_HDF5:BOOL=   -D HDF5_INCLUDE_DIRS:PATH=/work/00434/eijkhout/hdf5/installation-phdf5-1.14.3-milan-intel24-impi/include      -D HDF5_LIBRARY_DIRS:
PATH=/work/00434/eijkhout/hdf5/installation-phdf5-1.14.3-milan-intel24-impi/lib      -D TPL_ENABLE_Netcdf:BOOL=ON   -D Netcdf_INCLUDE_DIRS:PATH=/work/00434/eijkhout/netcdf/installation-pnetcdf-4.9.2
-milan-intel24-impi/include      -D DTPL_Netcdf_LIBRARIES=/work/00434/eijkhout/netcdf/installation-pnetcdf-4.9.2-milan-intel24-impi/lib64/libnetcdf.so   -D NOT_Netcdf_LIBRARY_DIRS:PATH=/work/00434/e
ijkhout/netcdf/installation-pnetcdf-4.9.2-milan-intel24-impi/lib64     -D Tpetra_INST_DOUBLE:BOOL=ON   -D Tpetra_INST_FLOAT:BOOL=OFF   -D Tpetra_INST_COMPLEX_FLOAT:BOOL=OFF   -D Tpetra_INST_COMPLEX_
DOUBLE:BOOL=OFF   -D Tpetra_INST_INT_LONG:BOOL=OFF   -D Tpetra_INST_INT_UNSIGNED:BOOL=OFF     -D TPL_ENABLE_Boost:BOOL=OFF   -D Boost_INCLUDE_DIRS:PATH=/work/00434/eijkhout/boost/installation-boost-
1.83.0-milan-intel24/include        -D Boost_LIBRARY_DIRS:PATH=/work/00434/eijkhout/boost/installation-boost-1.83.0-milan-intel24/lib        -D TPL_ENABLE_BoostLib:BOOL=OFF   -D BoostLib_INCLUDE_DIR
S:PATH=/work/00434/eijkhout/boost/installation-boost-1.83.0-milan-intel24/include        -D BoostLib_LIBRARY_DIRS:PATH=/work/00434/eijkhout/boost/installation-boost-1.83.0-milan-intel24/lib
 -D TPL_ENABLE_MUMPS:BOOL=0   -D MUMPS_INCLUDE_DIRS=   -D MUMPS_LIBRARY_DIRS=   -D MUMPS_LIBRARY_NAMES:STRING=   -D VLE_TPL_MUMPS_LIBRARIES:STRING=   -D TPL_ParMETIS_LIBRARIES='\'''\''   -D TPL_ParM
ETIS_INCLUDE_DIRS=     -D TPL_ENABLE_yaml-cpp:BOOL=0   -D yaml-cpp_INCLUDE_DIRS:PATH=   -D yaml-cpp_LIBRARY_DIRS:PATH=     -D Trilinos_ENABLE_Amesos:BOOL=ON       -D Trilinos_ENABLE_Amesos2:BOOL=ON
      -D Amesos2_ENABLE_KLU2:BOOL=ON       -D Amesos2_ENABLE_Basker:BOOL=ON   -D Trilinos_ENABLE_Anasazi:BOOL=ON   -D Trilinos_ENABLE_AztecOO:Bool=ON   -D Trilinos_ENABLE_Belos:BOOL=ON   -D Trilinos
_ENABLE_Epetra:Bool=ON   -D Trilinos_ENABLE_EpetraExt:Bool=ON   -D                 Epetra_ENABLE_TESTS:BOOL=ON   -D Deprecated_Trilinos_ENABLE_ExodusII:Bool=ON   -D Trilinos_ENABLE_FEI:Bool=ON   -D
Trilinos_ENABLE_Ifpack:Bool=ON       -D Trilinos_ENABLE_Ifpack2:BOOL=ON   -D Trilinos_ENABLE_Intrepid:BOOL=ON       -D Trilinos_ENABLE_Intrepid2:BOOL=ON       -D Intrepid_ENABLE_TESTS:BOOL=ON   -D T
rilinos_ENABLE_Isorropia:BOOL=ON   -D Trilinos_ENABLE_ML:BOOL=ON       -D ML_TAKES_SUPERLU_LESS_THAN_5=TRUE       -D ML_ENABLE_SuperLU:BOOL=OFF   -D Trilinos_ENABLE_MOOCHO:BOOL=ON   -D Trilinos_ENAB
LE_MueLu:BOOL=   -D                 MueLu_ENABLE_Tutorial:BOOL=OFF   -D                 MueLu_ENABLE_EXAMPLES:BOOL=OFF   -D Trilinos_ENABLE_NOX=ON   -D                 NOX_ENABLE_TESTS:BOOL=OFF   -D
 Trilinos_ENABLE_Pamgen:Bool=ON   -D Trilinos_ENABLE_Panzer:Bool=ON   -D Trilinos_ENABLE_Phalanx:BOOL=ON       -D Phalanx_EXPLICIT_TEMPLATE_INSTANTIATION=ON       -D Phalanx_ENABLE_EXAMPLES=OFF   -D
 Trilinos_ENABLE_Piro:BOOL=ON   -D Trilinos_ENABLE_Rythmos:BOOL=ON   -D Trilinos_ENABLE_Sacado:Bool=ON   -D Trilinos_ENABLE_SEACAS:BOOL=ON       -D Trilinos_ENABLE_SEACASIoss:BOOL=ON       -D Trilin
os_ENABLE_SEACASBlot:BOOL=ON       -D Trilinos_ENABLE_SEACASExodus:BOOL=ON   -D Trilinos_ENABLE_SECONDARY_STABLE_CODE:BOOL=ON   -D Trilinos_ENABLE_Shards:BOOL=ON   -D Trilinos_ENABLE_ShyLU:BOOL=OFF
  -D Trilinos_ENABLE_Stokhos:BOOL=ON   -D Trilinos_ENABLE_Stratimikos:BOOL=ON   -D Trilinos_ENABLE_Teko:BOOL=ON   -D Trilinos_ENABLE_Teuchos:BOOL=ON       -D Teuchos_ENABLE_LONG_LONG_INT:BOOL=ON   -
D Trilinos_ENABLE_Thyra:BOOL=ON   -D Trilinos_ENABLE_Tpetra:BOOL=ON   -D Trilinos_ENABLE_TriKota:BOOL=ON   -D Trilinos_ENABLE_Zoltan:BOOL=ON       -D Trilinos_ENABLE_Zoltan2:BOOL=ON     -D KOKKOS_IS
_REQUIRED_FOR_SEVERAL_PACKAGES=off   -D Trilinos_ENABLE_Kokkos:BOOL=ON   -D Trilinos_ENABLE_KokkosCore:BOOL=ON      -D Phalanx_INDEX_SIZE_TYPE:STRING='\''INT'\''   -D Phalanx_SHOW_DEPRECATED_WARNING
S:BOOL=OFF   -D Kokkos_ENABLE_Serial:BOOL=ON   -D Kokkos_ENABLE_OPENMP:BOOL=ON   -D Kokkos_ENABLE_Pthread:BOOL=OFF     -D Trilinos_ENABLE_STK:BOOL=0       -D Trilinos_ENABLE_STKIO:BOOL=0       -D Tr
ilinos_ENABLE_STKMesh:BOOL=0     -D SWIG_EXECUTABLE:FILEPATH=/swig '

Output

ESC[0mProcessing enabled external package/TPL: Netcdf (enabled explicitly, disable with -DTPL_ENABLE_Netcdf=OFF)ESC[0m
ESC[0m-- Netcdf_FINDMOD='/work/00434/eijkhout/trilinos/trilinos-15.0.0/cmake/tribits/common_tpls/FindTPLNetcdf.cmake'ESC[0m
ESC[0m-- File Trace: TPL        INCLUDE    /work/00434/eijkhout/trilinos/trilinos-15.0.0/cmake/tribits/common_tpls/FindTPLNetcdf.cmakeESC[0m
ESC[0mTRIBITS_TPL_FIND_INCLUDE_DIRS_AND_LIBRARIES: NetcdfESC[0m
ESC[0m-- PARSE_REQUIRED_HEADERS='netcdf.h'ESC[0m
ESC[0m-- PARSE_REQUIRED_LIBS_NAMES='netcdf;pnetcdf'ESC[0m

(How do I turn off the CMake coloring?)

Steps to Reproduce

See cmake as above.
Full log attached.
trilinos.zip

[VictorEijkhout]

Reading the CMakeLists it seems you require both libnetcdf and libpnetcdf. Does the latter refer to the "parallel-netcdf" package, version 1.9 or so, and not the parallel version of netcdf, version 4.6 or so?

[VictorEijkhout]

Please give clarification. Which parallel netcdf library are you expecting?

[VictorEijkhout]

See #12857