diff --git a/src/scripts/compute_impacted_targets.sh b/src/scripts/compute_impacted_targets.sh
index 2ef142c..1819d06 100755
--- a/src/scripts/compute_impacted_targets.sh
+++ b/src/scripts/compute_impacted_targets.sh
@@ -103,7 +103,7 @@ if [[ -n ${VERBOSE-} ]]; then
 	echo "Merge Instance Depth= ${merge_instance_depth}"
 
 	git checkout -q "${MERGE_INSTANCE_BRANCH_HEAD_SHA}"
-	git clean -dfx -f --exclude=".trunk" --exclude="tests" --exclude="local-action" .
+	git clean -dfx -f --exclude=".trunk" --exclude="tests" --exclude="local-action" --exclude="user.bazelrc" .
 	git submodule update --recursive
 	git log -n "${merge_instance_depth}" --oneline | cat
 
@@ -112,7 +112,7 @@ if [[ -n ${VERBOSE-} ]]; then
 	echo "PR Depth= ${pr_depth}"
 
 	git checkout -q "${original_branch}"
-	git clean -dfx -f --exclude=".trunk" --exclude="tests" --exclude="local-action" .
+	git clean -dfx -f --exclude=".trunk" --exclude="tests" --exclude="local-action" --exclude="user.bazelrc" .
 	git submodule update --recursive
 	git log -n "${pr_depth}" --oneline | cat
 fi