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I think the plugin only looks for new hypothesis notes or additions to existing ones. If you delete a file and resync, it won't appear. (Unless you edit each of the highlights and notes you made).
@weichenw, would it be possible to add the ability to check for modifications, deletions etc and then update appropriately?
@abhigenie92 if you want to force a refresh, then you can reset sync and re-sync all your annotations
I deleted an article & then restored it. It didn't sync any highlights from the article now.
Why is that?
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