diff --git a/Rscript/Library/MSI_app b/Rscript/Library/MSI_app
index edd06fce8..d67c80e65 160000
--- a/Rscript/Library/MSI_app
+++ b/Rscript/Library/MSI_app
@@ -1 +1 @@
-Subproject commit edd06fce80e52c816a42dabe509758846a705448
+Subproject commit d67c80e65b0128395ae7a9b53ccb461dda717230
diff --git a/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1 b/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1
index b6f6b8216..7bb1947d3 100644
--- a/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1
+++ b/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1
@@ -1,4 +1,4 @@
-.TH .EXTRACT_PUBMED_EVIDENCE 1 2024-Dec "" ".extract_pubmed_evidence"
+.TH .EXTRACT_PUBMED_EVIDENCE 1 2025-Jan "" ".extract_pubmed_evidence"
 .SH NAME
 .extract_pubmed_evidence \- .extract_pubmed_evidence(evidence, u, v,
     <i>type</i> = [<span style='color: brown;'><strong>'disease'</strong></span>,<span style='color: brown;'><strong>'compounds'</strong></span>])
@@ -23,4 +23,4 @@
 SMRUCC/R#.declare_function..extract_pubmed_evidence at pubchem.R:line 61
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/.graph_table.1 b/Rscript/Library/mzkit_app/man/.graph_table.1
index 8875e9588..dc91d8571 100644
--- a/Rscript/Library/mzkit_app/man/.graph_table.1
+++ b/Rscript/Library/mzkit_app/man/.graph_table.1
@@ -1,4 +1,4 @@
-.TH .GRAPH_TABLE 1 2024-Dec "" ".graph_table"
+.TH .GRAPH_TABLE 1 2025-Jan "" ".graph_table"
 .SH NAME
 .graph_table \- .graph_table(nodes,
     <i>type</i> = [<span style='color: brown;'><strong>'disease'</strong></span>,<span style='color: brown;'><strong>'compounds'</strong></span>])
@@ -17,4 +17,4 @@
 SMRUCC/R#.declare_function..graph_table at pubchem.R:line 34
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/.onLoad.1 b/Rscript/Library/mzkit_app/man/.onLoad.1
index cbed7292f..716134843 100644
--- a/Rscript/Library/mzkit_app/man/.onLoad.1
+++ b/Rscript/Library/mzkit_app/man/.onLoad.1
@@ -1,4 +1,4 @@
-.TH .ONLOAD 1 2024-Dec "" "Hello, world! This is an example function named 'hello' which prints 'Hello, world!'. You can learn more about package authoring with RStudio at: http://r-pkgs.had.co.nz/ Some useful keyboard shortcuts for package authoring: Install Package:           'Ctrl + Shift + B' Check Package:             'Ctrl + Shift + E' Test Package:              'Ctrl + Shift + T'"
+.TH .ONLOAD 1 2025-Jan "" "Hello, world! This is an example function named 'hello' which prints 'Hello, world!'. You can learn more about package authoring with RStudio at: http://r-pkgs.had.co.nz/ Some useful keyboard shortcuts for package authoring: Install Package:           'Ctrl + Shift + B' Check Package:             'Ctrl + Shift + E' Test Package:              'Ctrl + Shift + T'"
 .SH NAME
 .onLoad \- .onLoad()
 .SH SYNOPSIS
@@ -8,4 +8,4 @@
 SMRUCC/R#.declare_function..onLoad at zzz.R:line 21
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/.term_maps.1 b/Rscript/Library/mzkit_app/man/.term_maps.1
index c5aca4f37..d1ce6a517 100644
--- a/Rscript/Library/mzkit_app/man/.term_maps.1
+++ b/Rscript/Library/mzkit_app/man/.term_maps.1
@@ -1,4 +1,4 @@
-.TH .TERM_MAPS 1 2024-Dec "" ".term_maps"
+.TH .TERM_MAPS 1 2025-Jan "" ".term_maps"
 .SH NAME
 .term_maps \- .term_maps(x,
     <i>type</i> = [<span style='color: brown;'><strong>'disease'</strong></span>,<span style='color: brown;'><strong>'compounds'</strong></span>])
@@ -17,4 +17,4 @@
 SMRUCC/R#.declare_function..term_maps at pubchem.R:line 50
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/ANOVAGroup.1 b/Rscript/Library/mzkit_app/man/ANOVAGroup.1
index 258625b6d..6661a10ec 100644
--- a/Rscript/Library/mzkit_app/man/ANOVAGroup.1
+++ b/Rscript/Library/mzkit_app/man/ANOVAGroup.1
@@ -1,4 +1,4 @@
-.TH ANOVAGROUP 1 2024-Dec "" "Create a dataset for evaluate ANOVA p-value"
+.TH ANOVAGROUP 1 2025-Jan "" "Create a dataset for evaluate ANOVA p-value"
 .SH NAME
 ANOVAGroup \- ANOVAGroup(data, sampleinfo)
 .SH SYNOPSIS
@@ -19,4 +19,4 @@ a dataframe object that contains two fields: ``intensity`` and ``region_group``,
 SMRUCC/R#.declare_function.ANOVAGroup at math.R:line 87
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/GCMS_contentTable.1 b/Rscript/Library/mzkit_app/man/GCMS_contentTable.1
index d2fd49b02..8a9985533 100644
--- a/Rscript/Library/mzkit_app/man/GCMS_contentTable.1
+++ b/Rscript/Library/mzkit_app/man/GCMS_contentTable.1
@@ -1,4 +1,4 @@
-.TH GCMS_CONTENTTABLE 1 2024-Dec "" "Create content levels table"
+.TH GCMS_CONTENTTABLE 1 2025-Jan "" "Create content levels table"
 .SH NAME
 GCMS_contentTable \- GCMS_contentTable(mslIons, calfiles)
 .SH SYNOPSIS
@@ -19,4 +19,4 @@ the file names of the linear reference samples should be the content value like:
 SMRUCC/R#.declare_function.GCMS_contentTable at GCMS_SIM.R:line 42
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/GCMS_linearReport.1 b/Rscript/Library/mzkit_app/man/GCMS_linearReport.1
index 97c4bc83d..697cd6ae4 100644
--- a/Rscript/Library/mzkit_app/man/GCMS_linearReport.1
+++ b/Rscript/Library/mzkit_app/man/GCMS_linearReport.1
@@ -1,4 +1,4 @@
-.TH GCMS_LINEARREPORT 1 2024-Dec "" "GCMS_linearReport"
+.TH GCMS_LINEARREPORT 1 2025-Jan "" "GCMS_linearReport"
 .SH NAME
 GCMS_linearReport \- GCMS_linearReport(sim, ions, quantify, calfiles,
     <i>output.dir</i> = <span style='color: brown;'><strong>'./'</strong></span>)
@@ -26,4 +26,4 @@ GCMS_linearReport \- GCMS_linearReport(sim, ions, quantify, calfiles,
 SMRUCC/R#.declare_function.GCMS_linearReport at GCMS_SIM.R:line 65
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/GCMS_linears.1 b/Rscript/Library/mzkit_app/man/GCMS_linears.1
index 44326f4ba..e0d0b3492 100644
--- a/Rscript/Library/mzkit_app/man/GCMS_linears.1
+++ b/Rscript/Library/mzkit_app/man/GCMS_linears.1
@@ -1,4 +1,4 @@
-.TH GCMS_LINEARS 1 2024-Dec "" "Create reference linears for GCMS sim data"
+.TH GCMS_LINEARS 1 2025-Jan "" "Create reference linears for GCMS sim data"
 .SH NAME
 GCMS_linears \- GCMS_linears(contentTable, mslIons, calfiles,
     <i>peakwidth</i> = [<span style='color: green;'>13</span>],
@@ -37,4 +37,4 @@ a collection of data linears
 SMRUCC/R#.declare_function.GCMS_linears at GCMS_SIM.R:line 14
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/GCMS_quantify.1 b/Rscript/Library/mzkit_app/man/GCMS_quantify.1
index 9d32148ed..ad52207e2 100644
--- a/Rscript/Library/mzkit_app/man/GCMS_quantify.1
+++ b/Rscript/Library/mzkit_app/man/GCMS_quantify.1
@@ -1,4 +1,4 @@
-.TH GCMS_QUANTIFY 1 2024-Dec "" "GCMS_quantify"
+.TH GCMS_QUANTIFY 1 2025-Jan "" "GCMS_quantify"
 .SH NAME
 GCMS_quantify \- GCMS_quantify(linears, sim, sampleData)
 .SH SYNOPSIS
@@ -18,4 +18,4 @@ GCMS_quantify \- GCMS_quantify(linears, sim, sampleData)
 SMRUCC/R#.declare_function.GCMS_quantify at GCMS_SIM.R:line 51
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1 b/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1
index 5b4886c9a..184d12bf8 100644
--- a/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1
+++ b/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1
@@ -1,4 +1,4 @@
-.TH __DECONV_GCMS_SINGLE 1 2024-Dec "" "__deconv_gcms_single"
+.TH __DECONV_GCMS_SINGLE 1 2025-Jan "" "__deconv_gcms_single"
 .SH NAME
 __deconv_gcms_single \- __deconv_gcms_single(file,
     <i>peak.width</i> = [<span style='color: green;'>90</span>])
@@ -17,4 +17,4 @@ __deconv_gcms_single \- __deconv_gcms_single(file,
 SMRUCC/R#.declare_function.__deconv_gcms_single at deconv.R:line 45
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1 b/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1
index dbc25a6c0..2dd1651ee 100644
--- a/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1
+++ b/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1
@@ -1,4 +1,4 @@
-.TH __MS1_XIC_BINS_SINGLE 1 2024-Dec "" "export XIC data for a single rawdata file"
+.TH __MS1_XIC_BINS_SINGLE 1 2025-Jan "" "export XIC data for a single rawdata file"
 .SH NAME
 __ms1_xic_bins_single \- __ms1_xic_bins_single(path, mzdiff, outputdir)
 .SH SYNOPSIS
@@ -22,4 +22,4 @@ this function returns nothing
 SMRUCC/R#.declare_function.__ms1_xic_bins_single at ms1_xic_bins.R:line 74
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/convertToMzPack.1 b/Rscript/Library/mzkit_app/man/convertToMzPack.1
index b55baa9a2..758f7c951 100644
--- a/Rscript/Library/mzkit_app/man/convertToMzPack.1
+++ b/Rscript/Library/mzkit_app/man/convertToMzPack.1
@@ -1,4 +1,4 @@
-.TH CONVERTTOMZPACK 1 2024-Dec "" "Convert to mzpack data object"
+.TH CONVERTTOMZPACK 1 2025-Jan "" "Convert to mzpack data object"
 .SH NAME
 convertToMzPack \- convertToMzPack(file)
 .SH SYNOPSIS
@@ -16,4 +16,4 @@ this function is a unify method for Convert ``*.mzXML``/``*.mzML``/``*.raw`` to
 SMRUCC/R#.declare_function.convertToMzPack at rawfile.R:line 19
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/deconv_gcms.1 b/Rscript/Library/mzkit_app/man/deconv_gcms.1
index a7ee90e7a..90cce27eb 100644
--- a/Rscript/Library/mzkit_app/man/deconv_gcms.1
+++ b/Rscript/Library/mzkit_app/man/deconv_gcms.1
@@ -1,4 +1,4 @@
-.TH DECONV_GCMS 1 2024-Dec "" "Make expression peak table deconvolution of the GCMS rawdata"
+.TH DECONV_GCMS 1 2025-Jan "" "Make expression peak table deconvolution of the GCMS rawdata"
 .SH NAME
 deconv_gcms \- deconv_gcms(rawdata,
     <i>export.dir</i> = <span style='color: brown;'><strong>'./'</strong></span>,
@@ -27,4 +27,4 @@ deconv_gcms \- deconv_gcms(rawdata,
 SMRUCC/R#.declare_function.deconv_gcms at deconv.R:line 4
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/getDataValues.1 b/Rscript/Library/mzkit_app/man/getDataValues.1
index 9103d74f3..91baaa0e3 100644
--- a/Rscript/Library/mzkit_app/man/getDataValues.1
+++ b/Rscript/Library/mzkit_app/man/getDataValues.1
@@ -1,4 +1,4 @@
-.TH GETDATAVALUES 1 2024-Dec "" "get values in section$data"
+.TH GETDATAVALUES 1 2025-Jan "" "get values in section$data"
 .SH NAME
 getDataValues \- getDataValues(section)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ getDataValues \- getDataValues(section)
 SMRUCC/R#.declare_function.getDataValues at pugView.R:line 95
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/getQuery.1 b/Rscript/Library/mzkit_app/man/getQuery.1
index 274d4b7c4..acf8000bf 100644
--- a/Rscript/Library/mzkit_app/man/getQuery.1
+++ b/Rscript/Library/mzkit_app/man/getQuery.1
@@ -1,4 +1,4 @@
-.TH GETQUERY 1 2024-Dec "" "getQuery"
+.TH GETQUERY 1 2025-Jan "" "getQuery"
 .SH NAME
 getQuery \- getQuery(fileName)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ getQuery \- getQuery(fileName)
 SMRUCC/R#.declare_function.getQuery at pugView.R:line 111
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/get_representives.1 b/Rscript/Library/mzkit_app/man/get_representives.1
index e94e8089d..b6befbff3 100644
--- a/Rscript/Library/mzkit_app/man/get_representives.1
+++ b/Rscript/Library/mzkit_app/man/get_representives.1
@@ -1,4 +1,4 @@
-.TH GET_REPRESENTIVES 1 2024-Dec "" "Get n representive spectrums via molecular networking"
+.TH GET_REPRESENTIVES 1 2025-Jan "" "Get n representive spectrums via molecular networking"
 .SH NAME
 get_representives \- get_representives(ions,
     <i>top.n</i> = <span style='color: green;'>5</span>,
@@ -36,4 +36,4 @@ a collection of peakms2 data object, number of the spectrum is specificed via th
 SMRUCC/R#.declare_function.get_representives at spectrum_cluster.R:line 15
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1 b/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1
index 02aac7fe0..f71474eaf 100644
--- a/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1
+++ b/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1
@@ -1,4 +1,4 @@
-.TH IONPAIRSFROMMSL 1 2024-Dec "" "Read ion pairs data from MSL dataset"
+.TH IONPAIRSFROMMSL 1 2025-Jan "" "Read ion pairs data from MSL dataset"
 .SH NAME
 ionPairsFromMsl \- ionPairsFromMsl(ions,
     <i>unit</i> = <span style='color: brown;'><strong>'Minute'</strong></span>)
@@ -25,4 +25,4 @@ this function will auto handling of the MSL ions data source of the raw dataset
 SMRUCC/R#.declare_function.ionPairsFromMsl at MRM.R:line 15
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/kegg_compounds.1 b/Rscript/Library/mzkit_app/man/kegg_compounds.1
index 4961de2d3..2cf94c700 100644
--- a/Rscript/Library/mzkit_app/man/kegg_compounds.1
+++ b/Rscript/Library/mzkit_app/man/kegg_compounds.1
@@ -1,4 +1,4 @@
-.TH KEGG_COMPOUNDS 1 2024-Dec "" "Load the kegg database for the annotation"
+.TH KEGG_COMPOUNDS 1 2025-Jan "" "Load the kegg database for the annotation"
 .SH NAME
 kegg_compounds \- kegg_compounds(
     <i>precursors</i> = [<span style='color: brown;'><strong>'[M+H]+'</strong></span>,<span style='color: brown;'><strong>'[M+H-H2O]+'</strong></span>],
@@ -33,4 +33,4 @@ a wrapper of the mass search engine which have kegg compound library loaded.
 SMRUCC/R#.declare_function.kegg_compounds at annotation.R:line 18
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/knowledge_graph.1 b/Rscript/Library/mzkit_app/man/knowledge_graph.1
index 625c6564e..0b9608ce0 100644
--- a/Rscript/Library/mzkit_app/man/knowledge_graph.1
+++ b/Rscript/Library/mzkit_app/man/knowledge_graph.1
@@ -1,4 +1,4 @@
-.TH KNOWLEDGE_GRAPH 1 2024-Dec "" "Query pubchem for knowledge network"
+.TH KNOWLEDGE_GRAPH 1 2025-Jan "" "Query pubchem for knowledge network"
 .SH NAME
 knowledge_graph \- knowledge_graph(cid,
     <i>cache</i> = <span style='color: brown;'><strong>'./graph_kb'</strong></span>)
@@ -21,4 +21,4 @@ a tuple list that contains 3 elements: + genes + disease + compounds
 SMRUCC/R#.declare_function.knowledge_graph at pubchem.R:line 24
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/lipidmaps_repo.1 b/Rscript/Library/mzkit_app/man/lipidmaps_repo.1
index f36ce688e..ec3ae639c 100644
--- a/Rscript/Library/mzkit_app/man/lipidmaps_repo.1
+++ b/Rscript/Library/mzkit_app/man/lipidmaps_repo.1
@@ -1,4 +1,4 @@
-.TH LIPIDMAPS_REPO 1 2024-Dec "" "Load lipidmaps data repository from internal data pack"
+.TH LIPIDMAPS_REPO 1 2025-Jan "" "Load lipidmaps data repository from internal data pack"
 .SH NAME
 lipidmaps_repo \- lipidmaps_repo(
     <i>repofile</i> = 'system.file'('data/LIPIDMAPS.msgpack', 'package' = 'mzkit'),
@@ -28,4 +28,4 @@ a data seuqnece of lipidmaps metadata
 SMRUCC/R#.declare_function.lipidmaps_repo at lipidmaps.R:line 10
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/loadTree.1 b/Rscript/Library/mzkit_app/man/loadTree.1
index d260c9f2c..43e9b3f65 100644
--- a/Rscript/Library/mzkit_app/man/loadTree.1
+++ b/Rscript/Library/mzkit_app/man/loadTree.1
@@ -1,4 +1,4 @@
-.TH LOADTREE 1 2024-Dec "" "Load spectrum tree from raw data files"
+.TH LOADTREE 1 2025-Jan "" "Load spectrum tree from raw data files"
 .SH NAME
 loadTree \- loadTree(files)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ loadTree \- loadTree(files)
 SMRUCC/R#.declare_function.loadTree at rawfile.R:line 8
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/load_LMSD.1 b/Rscript/Library/mzkit_app/man/load_LMSD.1
index 3a97e2d29..949b4b5a2 100644
--- a/Rscript/Library/mzkit_app/man/load_LMSD.1
+++ b/Rscript/Library/mzkit_app/man/load_LMSD.1
@@ -1,4 +1,4 @@
-.TH LOAD_LMSD 1 2024-Dec "" "load the lipidmaps raw database"
+.TH LOAD_LMSD 1 2025-Jan "" "load the lipidmaps raw database"
 .SH NAME
 load_LMSD \- load_LMSD(filepath,
     <i>lazy</i> = <span style='color: blue !important;'>FALSE</span>)
@@ -17,4 +17,4 @@ load_LMSD \- load_LMSD(filepath,
 SMRUCC/R#.declare_function.load_LMSD at lipidmaps.R:line 34
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/make_peak_alignment.1 b/Rscript/Library/mzkit_app/man/make_peak_alignment.1
index 4f3453fe2..09fe7a11c 100644
--- a/Rscript/Library/mzkit_app/man/make_peak_alignment.1
+++ b/Rscript/Library/mzkit_app/man/make_peak_alignment.1
@@ -1,4 +1,4 @@
-.TH MAKE_PEAK_ALIGNMENT 1 2024-Dec "" "make peaktable"
+.TH MAKE_PEAK_ALIGNMENT 1 2025-Jan "" "make peaktable"
 .SH NAME
 make_peak_alignment \- make_peak_alignment(peakfiles,
     <i>max.rtwin</i> = <span style='color: green;'>15</span>,
@@ -22,4 +22,4 @@ make_peak_alignment \- make_peak_alignment(peakfiles,
 SMRUCC/R#.declare_function.make_peak_alignment at make_peak_alignment.R:line 6
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/mesh_model.1 b/Rscript/Library/mzkit_app/man/mesh_model.1
index 8999347bb..c1ce1807f 100644
--- a/Rscript/Library/mzkit_app/man/mesh_model.1
+++ b/Rscript/Library/mzkit_app/man/mesh_model.1
@@ -1,4 +1,4 @@
-.TH MESH_MODEL 1 2024-Dec "" "Load mesh background model from run enrichment analysis"
+.TH MESH_MODEL 1 2025-Jan "" "Load mesh background model from run enrichment analysis"
 .SH NAME
 mesh_model \- mesh_model(
     <i>topics</i> = <span style='color: blue !important;'>NULL</span>)
@@ -18,4 +18,4 @@ MeSH (Medical Subject Headings) is the NLM controlled vocabulary thesaurus used
 SMRUCC/R#.declare_function.mesh_model at pubchem.R:line 6
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/ms1_mz_bins.1 b/Rscript/Library/mzkit_app/man/ms1_mz_bins.1
index 1d834f636..4a5ff13f4 100644
--- a/Rscript/Library/mzkit_app/man/ms1_mz_bins.1
+++ b/Rscript/Library/mzkit_app/man/ms1_mz_bins.1
@@ -1,4 +1,4 @@
-.TH MS1_MZ_BINS 1 2024-Dec "" "Extract the ion m/z features"
+.TH MS1_MZ_BINS 1 2025-Jan "" "Extract the ion m/z features"
 .SH NAME
 ms1_mz_bins \- ms1_mz_bins(files,
     <i>mzdiff</i> = <span style='color: green;'>0.001</span>)
@@ -21,4 +21,4 @@ a dataframe object that contains the ion m/z features, data fields are included
 SMRUCC/R#.declare_function.ms1_mz_bins at ms1_mz_bins.R:line 14
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/ms1_peaktable.1 b/Rscript/Library/mzkit_app/man/ms1_peaktable.1
index 19d5845a7..b09b8d1fb 100644
--- a/Rscript/Library/mzkit_app/man/ms1_peaktable.1
+++ b/Rscript/Library/mzkit_app/man/ms1_peaktable.1
@@ -1,4 +1,4 @@
-.TH MS1_PEAKTABLE 1 2024-Dec "" "Export peakstable data from the XIC rawdata files"
+.TH MS1_PEAKTABLE 1 2025-Jan "" "Export peakstable data from the XIC rawdata files"
 .SH NAME
 ms1_peaktable \- ms1_peaktable(files, mzbins,
     <i>mzdiff</i> = <span style='color: green;'>0.005</span>,
@@ -29,4 +29,4 @@ this function generates a xcms format liked peaktable dataframe object for the i
 SMRUCC/R#.declare_function.ms1_peaktable at ms1_peaktable.R:line 14
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/ms1_xic_bins.1 b/Rscript/Library/mzkit_app/man/ms1_xic_bins.1
index f65e7e046..7ac9b331e 100644
--- a/Rscript/Library/mzkit_app/man/ms1_xic_bins.1
+++ b/Rscript/Library/mzkit_app/man/ms1_xic_bins.1
@@ -1,4 +1,4 @@
-.TH MS1_XIC_BINS 1 2024-Dec "" "Create XIC rawdata file for run peaktable exports"
+.TH MS1_XIC_BINS 1 2025-Jan "" "Create XIC rawdata file for run peaktable exports"
 .SH NAME
 ms1_xic_bins \- ms1_xic_bins(files,
     <i>mzdiff</i> = <span style='color: green;'>0.005</span>,
@@ -31,4 +31,4 @@ this function returns nothing
 SMRUCC/R#.declare_function.ms1_xic_bins at ms1_xic_bins.R:line 12
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/output_datatables.1 b/Rscript/Library/mzkit_app/man/output_datatables.1
index 817f01e6c..b0aa1df10 100644
--- a/Rscript/Library/mzkit_app/man/output_datatables.1
+++ b/Rscript/Library/mzkit_app/man/output_datatables.1
@@ -1,4 +1,4 @@
-.TH OUTPUT_DATATABLES 1 2024-Dec "" "Output result data table"
+.TH OUTPUT_DATATABLES 1 2025-Jan "" "Output result data table"
 .SH NAME
 output_datatables \- output_datatables(quantify, linears,
     <i>output.dir</i> = <span style='color: brown;'><strong>'./'</strong></span>)
@@ -24,4 +24,4 @@ this function will output 4 tables in the target ``output_dir`` folder. the 4 ta
 SMRUCC/R#.declare_function.output_datatables at linears.R:line 39
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/pack_singleCells.1 b/Rscript/Library/mzkit_app/man/pack_singleCells.1
index 616aadd93..6b1b2ee89 100644
--- a/Rscript/Library/mzkit_app/man/pack_singleCells.1
+++ b/Rscript/Library/mzkit_app/man/pack_singleCells.1
@@ -1,4 +1,4 @@
-.TH PACK_SINGLECELLS 1 2024-Dec "" "pack the multiple single cells samples into one dataset."
+.TH PACK_SINGLECELLS 1 2025-Jan "" "pack the multiple single cells samples into one dataset."
 .SH NAME
 pack_singleCells \- pack_singleCells(rawdata,
     <i>tag</i> = <span style='color: blue !important;'>NULL</span>)
@@ -17,4 +17,4 @@ pack_singleCells \- pack_singleCells(rawdata,
 SMRUCC/R#.declare_function.pack_singleCells at pack_singleCells.R:line 11
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/parseDescriptors.1 b/Rscript/Library/mzkit_app/man/parseDescriptors.1
index 5f9ee16f7..a89447fdb 100644
--- a/Rscript/Library/mzkit_app/man/parseDescriptors.1
+++ b/Rscript/Library/mzkit_app/man/parseDescriptors.1
@@ -1,4 +1,4 @@
-.TH PARSEDESCRIPTORS 1 2024-Dec "" "parseDescriptors"
+.TH PARSEDESCRIPTORS 1 2025-Jan "" "parseDescriptors"
 .SH NAME
 parseDescriptors \- parseDescriptors(descriptors)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ parseDescriptors \- parseDescriptors(descriptors)
 SMRUCC/R#.declare_function.parseDescriptors at pugView.R:line 87
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/parseNames.1 b/Rscript/Library/mzkit_app/man/parseNames.1
index 71e7d1757..af35f1d11 100644
--- a/Rscript/Library/mzkit_app/man/parseNames.1
+++ b/Rscript/Library/mzkit_app/man/parseNames.1
@@ -1,4 +1,4 @@
-.TH PARSENAMES 1 2024-Dec "" "parseNames"
+.TH PARSENAMES 1 2025-Jan "" "parseNames"
 .SH NAME
 parseNames \- parseNames(names)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ parseNames \- parseNames(names)
 SMRUCC/R#.declare_function.parseNames at pugView.R:line 99
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/parsePubchemMeta.1 b/Rscript/Library/mzkit_app/man/parsePubchemMeta.1
index 30c5f843b..745eb0542 100644
--- a/Rscript/Library/mzkit_app/man/parsePubchemMeta.1
+++ b/Rscript/Library/mzkit_app/man/parsePubchemMeta.1
@@ -1,4 +1,4 @@
-.TH PARSEPUBCHEMMETA 1 2024-Dec "" "Parse the compound information"
+.TH PARSEPUBCHEMMETA 1 2025-Jan "" "Parse the compound information"
 .SH NAME
 parsePubchemMeta \- parsePubchemMeta(document)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ parsePubchemMeta \- parsePubchemMeta(document)
 SMRUCC/R#.declare_function.parsePubchemMeta at pugView.R:line 43
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/parseXref.1 b/Rscript/Library/mzkit_app/man/parseXref.1
index f7cd5dedd..d4274eced 100644
--- a/Rscript/Library/mzkit_app/man/parseXref.1
+++ b/Rscript/Library/mzkit_app/man/parseXref.1
@@ -1,4 +1,4 @@
-.TH PARSEXREF 1 2024-Dec "" "parseXref"
+.TH PARSEXREF 1 2025-Jan "" "parseXref"
 .SH NAME
 parseXref \- parseXref(refs)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ parseXref \- parseXref(refs)
 SMRUCC/R#.declare_function.parseXref at pugView.R:line 74
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/plotLinears.1 b/Rscript/Library/mzkit_app/man/plotLinears.1
index 4235fb752..2385e0c7c 100644
--- a/Rscript/Library/mzkit_app/man/plotLinears.1
+++ b/Rscript/Library/mzkit_app/man/plotLinears.1
@@ -1,4 +1,4 @@
-.TH PLOTLINEARS 1 2024-Dec "" "plotLinears"
+.TH PLOTLINEARS 1 2025-Jan "" "plotLinears"
 .SH NAME
 plotLinears \- plotLinears(linears,
     <i>mslIons</i> = <span style='color: blue !important;'>NULL</span>,
@@ -22,4 +22,4 @@ plotLinears \- plotLinears(linears,
 SMRUCC/R#.declare_function.plotLinears at linears.R:line 4
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/preprocessing_expression.1 b/Rscript/Library/mzkit_app/man/preprocessing_expression.1
index 231d79bab..1d16e9c00 100644
--- a/Rscript/Library/mzkit_app/man/preprocessing_expression.1
+++ b/Rscript/Library/mzkit_app/man/preprocessing_expression.1
@@ -1,4 +1,4 @@
-.TH PREPROCESSING_EXPRESSION 1 2024-Dec "" "Normalize matrix sample data"
+.TH PREPROCESSING_EXPRESSION 1 2025-Jan "" "Normalize matrix sample data"
 .SH NAME
 preprocessing_expression \- preprocessing_expression(x,
     <i>sampleinfo</i> = <span style='color: blue !important;'>NULL</span>,
@@ -31,4 +31,4 @@ a result data matrix has been normalized via total sum of the peak area.
 SMRUCC/R#.declare_function.preprocessing_expression at math.R:line 27
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/pubchem_graphjson.1 b/Rscript/Library/mzkit_app/man/pubchem_graphjson.1
index ab2e27b4a..3c85b4ead 100644
--- a/Rscript/Library/mzkit_app/man/pubchem_graphjson.1
+++ b/Rscript/Library/mzkit_app/man/pubchem_graphjson.1
@@ -1,4 +1,4 @@
-.TH PUBCHEM_GRAPHJSON 1 2024-Dec "" "Parse the pugview xml as the metabolite data object"
+.TH PUBCHEM_GRAPHJSON 1 2025-Jan "" "Parse the pugview xml as the metabolite data object"
 .SH NAME
 pubchem_graphjson \- pubchem_graphjson(dataXml,
     <i>process</i> = <span style='color: blue !important;'>NULL</span>,
@@ -26,4 +26,4 @@ A generated metabolite object that could be used for dump well formatted json
 SMRUCC/R#.declare_function.pubchem_graphjson at graph_json.R:line 15
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/pubchem_meta.1 b/Rscript/Library/mzkit_app/man/pubchem_meta.1
index 55262f8d6..bb4d55580 100644
--- a/Rscript/Library/mzkit_app/man/pubchem_meta.1
+++ b/Rscript/Library/mzkit_app/man/pubchem_meta.1
@@ -1,4 +1,4 @@
-.TH PUBCHEM_META 1 2024-Dec "" "Helper script for run pubchem database query"
+.TH PUBCHEM_META 1 2025-Jan "" "Helper script for run pubchem database query"
 .SH NAME
 pubchem_meta \- pubchem_meta(term)
 .SH SYNOPSIS
@@ -16,4 +16,4 @@ a tuple list of the possible metabolite matches of the input search term.
 SMRUCC/R#.declare_function.pubchem_meta at pugView.R:line 15
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/read.cfmid_3_EI.1 b/Rscript/Library/mzkit_app/man/read.cfmid_3_EI.1
index f21f4eb22..ff61c0eef 100644
--- a/Rscript/Library/mzkit_app/man/read.cfmid_3_EI.1
+++ b/Rscript/Library/mzkit_app/man/read.cfmid_3_EI.1
@@ -1,4 +1,4 @@
-.TH READ.CFMID_3_EI 1 2024-Dec "" "Read the predict result file from cfm-id EI model output"
+.TH READ.CFMID_3_EI 1 2025-Jan "" "Read the predict result file from cfm-id EI model output"
 .SH NAME
 read.cfmid_3_EI \- read.cfmid_3_EI(file)
 .SH SYNOPSIS
@@ -12,4 +12,4 @@ read.cfmid_3_EI \- read.cfmid_3_EI(file)
 SMRUCC/R#.declare_function.read.cfmid_3_EI at cfmid_3_EI.R:line 3
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/run.Deconvolution.1 b/Rscript/Library/mzkit_app/man/run.Deconvolution.1
index 40b08af33..3ffc0f77e 100644
--- a/Rscript/Library/mzkit_app/man/run.Deconvolution.1
+++ b/Rscript/Library/mzkit_app/man/run.Deconvolution.1
@@ -1,4 +1,4 @@
-.TH RUN.DECONVOLUTION 1 2024-Dec "" "Do ms1 deconvolution of the rawdata"
+.TH RUN.DECONVOLUTION 1 2025-Jan "" "Do ms1 deconvolution of the rawdata"
 .SH NAME
 run.Deconvolution \- run.Deconvolution(rawdata,
     <i>outputdir</i> = <span style='color: brown;'><strong>'./'</strong></span>,
@@ -46,4 +46,4 @@ this function returns nothing
 SMRUCC/R#.declare_function.run.Deconvolution at deco.R:line 23
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/Rscript/Library/mzkit_app/man/tolerance.1 b/Rscript/Library/mzkit_app/man/tolerance.1
index c6e8ab959..381dfb6ee 100644
--- a/Rscript/Library/mzkit_app/man/tolerance.1
+++ b/Rscript/Library/mzkit_app/man/tolerance.1
@@ -1,4 +1,4 @@
-.TH TOLERANCE 1 2024-Dec "" "Create mzdiff tolerance value"
+.TH TOLERANCE 1 2025-Jan "" "Create mzdiff tolerance value"
 .SH NAME
 tolerance \- tolerance(
     <i>kind</i> = <span style='color: brown;'><strong>'ppm'</strong></span>,
@@ -19,4 +19,4 @@ tolerance \- tolerance(
 SMRUCC/R#.declare_function.tolerance at math.R:line 9
 .PP
 .SH COPYRIGHT
-Copyright © xieguigang, MIT Licensed 2024
+Copyright © xieguigang, MIT Licensed 2025
diff --git a/src/mzkit b/src/mzkit
index e6e005222..d68a2b50a 160000
--- a/src/mzkit
+++ b/src/mzkit
@@ -1 +1 @@
-Subproject commit e6e0052226b4f87352651fc30037f7bde0983a33
+Subproject commit d68a2b50a6d368fc0232faf70474404649918f3a