This directory contains various scripts used by the pipeline. However, you can use most of these scripts on their own, too. Some may even be helpful in day-to-day use.
All python scripts implement the --help argument.
A python script that filters out shared cellular barcodes among the samples.
A python script that changes cellular barcodes in a BAM file.
A python script that calculates summarizes the results of the simulation.
A python script that simulates doublets by deciding how to rename barcodes.