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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 310 repositories
  • aind-ephys-processing-qc Public

    CodeOcean Capsule for ephys quality control

    AllenNeuralDynamics/aind-ephys-processing-qc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
  • aind-units-nwb Public

    Code Ocean capsule to export ephys units data to NWB

    AllenNeuralDynamics/aind-units-nwb’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jan 10, 2025
  • AllenNeuralDynamics/aind-subject-nwb’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Jan 10, 2025
  • aind-ephys-results-collector Public

    Code Ocean capsule for result collection

    AllenNeuralDynamics/aind-ephys-results-collector’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
  • aind-ephys-curation Public

    Code Ocean capsule for ephys curation

    AllenNeuralDynamics/aind-ephys-curation’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 10, 2025
  • aind-ephys-postprocessing Public

    CodeOcean capsule for ephys post-processing

    AllenNeuralDynamics/aind-ephys-postprocessing’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 10, 2025
  • aind-ephys-spikesort-kilosort4 Public

    CodeOcean capsule for ephys spike sorting with Kilosort4

    AllenNeuralDynamics/aind-ephys-spikesort-kilosort4’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Jan 10, 2025
  • aind-ephys-preprocessing Public

    CodeOcean capsule for ephys preprocessing

    AllenNeuralDynamics/aind-ephys-preprocessing’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
  • aind-ephys-job-dispatch Public

    Capsule to dispatch ephys jobs in CO pipeline

    AllenNeuralDynamics/aind-ephys-job-dispatch’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
  • aind-ephys-unit-classifier Public

    Classify spike sorting units

    AllenNeuralDynamics/aind-ephys-unit-classifier’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 10, 2025

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