Add notebook with pub figures and data #27

	name: run-demo-pipeline

	# This workflow uses the Snakemake GitHub action to test that the Snakemake
	# pipeline can be run in dryrun mode, as a sanity check

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	run-demo-pipeline:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v3

	- name: Create empty ND2 file
	run: mkdir -p raw_data && touch raw_data/my_file.nd2

	- name: Test workflow
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: ./Snakefile
	args: "--software-deployment-method conda --show-failed-logs --config input_dirpath=raw_data/ input_prefix=raw_data/ output_dirpath=outputs/ -n"

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