Flesh out docs for the application-specific overrides. #191
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: R CMD check | |
| jobs: | |
| check: | |
| name: R CMD check | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set directories | |
| run: | | |
| echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
| - name: Restore the package directory | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: check-packages | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| stuff <- read.dcf("DESCRIPTION") | |
| stuff <- stuff[,intersect(colnames(stuff), c("Imports", "LinkingTo", "Suggests", "Depends"))] | |
| deps <- sub(" .*", "", unlist(strsplit(stuff, ",\\s*"), use.names=FALSE)) | |
| BiocManager::install(deps) | |
| - name: Build the package | |
| run: R CMD build . | |
| - name: Check the package | |
| run: | | |
| tarball=$(ls *.tar.gz) | |
| R CMD check --no-manual $tarball |