add dependencies to Dockerfile and github workflows #57
Artur-manAnnotations
5 errors and 90 warnings
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check (macos-latest, release)
No such keg: /opt/homebrew/Cellar/[email protected]
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check (macos-latest, release)
package or namespace load failed for ‘VoltRon’ in .requirePackage(package):
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check (windows-latest, release, 44)
package or namespace load failed for 'VoltRon' in .requirePackage(package):
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check (ubuntu-24.04, release)
package or namespace load failed for ‘VoltRon’ in .requirePackage(package):
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check (ubuntu-latest, release)
package or namespace load failed for ‘VoltRon’ in .requirePackage(package):
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check (macos-latest, release)
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
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check (macos-latest, release)
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
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check (macos-latest, release)
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
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check (macos-latest, release)
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
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check (macos-latest, release)
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
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check (macos-latest, release)
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
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check (macos-latest, release)
Unused variable ‘i’ declared at (1) [-Wunused-variable]
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check (macos-latest, release)
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
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check (macos-latest, release)
Unused dummy argument ‘ifmt’ at (1) [-Wunused-dummy-argument]
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check (macos-latest, release)
Unused variable ‘j’ declared at (1) [-Wunused-variable]
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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check (macos-latest, release)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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check (macos-latest, release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
undefined slot classes in definition of "ZarrArray": seed(class "Array_OR_array_OR_df")
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check (macos-latest, release)
undefined slot classes in definition of "ZarrMatrix": seed(class "Array_OR_array_OR_df")
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
ImageArray-package.Rd:26: All text must be in a section
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (macos-latest, release)
Found the following significant warnings:
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check (macos-latest, release)
Loading required package: BPCells
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check (macos-latest, release)
trying URL 'https://downloads.openmicroscopy.org/bio-formats/7.3.0/artifacts/bioformats_package.jar'
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check (macos-latest, release)
vrMainFeatureType<-:
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check (macos-latest, release)
Undocumented code objects:
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check (windows-latest, release, 44)
file 'VoltRon/cleanup' did not have execute permissions: corrected
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check (windows-latest, release, 44)
file 'VoltRon/configure' did not have execute permissions: corrected
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check (windows-latest, release, 44)
Found the following significant warnings:
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check (windows-latest, release, 44)
Loading required package: BPCells
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check (windows-latest, release, 44)
trying URL 'https://downloads.openmicroscopy.org/bio-formats/7.3.0/artifacts/bioformats_package.jar'
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check (windows-latest, release, 44)
vrMainFeatureType<-:
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check (windows-latest, release, 44)
Undocumented code objects:
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check (windows-latest, release, 44)
file 'BPCells/cleanup' did not have execute permissions: corrected
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check (windows-latest, release, 44)
file 'BPCells/configure' did not have execute permissions: corrected
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check (windows-latest, release, 44)
replacing previous import 'pizzarr::slice' by 'IRanges::slice' when loading 'ZarrArray'
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check (windows-latest, release, 44)
undefined slot classes in definition of "ZarrArray": seed(class "Array_OR_array_OR_df")
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check (windows-latest, release, 44)
undefined slot classes in definition of "ZarrMatrix": seed(class "Array_OR_array_OR_df")
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check (windows-latest, release, 44)
replacing previous import 'pizzarr::slice' by 'IRanges::slice' when loading 'ZarrArray'
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check (windows-latest, release, 44)
replacing previous import 'pizzarr::slice' by 'IRanges::slice' when loading 'ZarrArray'
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check (windows-latest, release, 44)
replacing previous import 'pizzarr::slice' by 'IRanges::slice' when loading 'ZarrArray'
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check (windows-latest, release, 44)
ImageArray-package.Rd:26: All text must be in a section
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check (windows-latest, release, 44)
replacing previous import 'pizzarr::slice' by 'IRanges::slice' when loading 'ZarrArray'
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check (windows-latest, release, 44)
file 'VoltRon/cleanup' did not have execute permissions: corrected
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check (windows-latest, release, 44)
file 'VoltRon/configure' did not have execute permissions: corrected
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check (windows-latest, release, 44)
replacing previous import 'data.table::melt' by 'reshape2::melt' when loading 'VoltRon'
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check (windows-latest, release, 44)
replacing previous import 'data.table::melt' by 'reshape2::melt' when loading 'VoltRon'
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check (windows-latest, release, 44)
replacing previous import 'data.table::melt' by 'reshape2::melt' when loading 'VoltRon'
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
undefined slot classes in definition of "ZarrArray": seed(class "Array_OR_array_OR_df")
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check (ubuntu-24.04, release)
undefined slot classes in definition of "ZarrMatrix": seed(class "Array_OR_array_OR_df")
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
ImageArray-package.Rd:26: All text must be in a section
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-24.04, release)
Found the following executable files:
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check (ubuntu-24.04, release)
Found the following files with non-portable file names:
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check (ubuntu-24.04, release)
Found the following significant warnings:
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check (ubuntu-24.04, release)
Loading required package: BPCells
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check (ubuntu-24.04, release)
'::' or ':::' imports not declared from:
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check (ubuntu-24.04, release)
vrMainFeatureType<-:
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check (ubuntu-24.04, release)
Undocumented code objects:
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check (ubuntu-24.04, release)
Found the following file(s) containing GNU extensions:
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check (ubuntu-latest, release)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
undefined slot classes in definition of "ZarrArray": seed(class "Array_OR_array_OR_df")
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check (ubuntu-latest, release)
undefined slot classes in definition of "ZarrMatrix": seed(class "Array_OR_array_OR_df")
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
ImageArray-package.Rd:26: All text must be in a section
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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check (ubuntu-latest, release)
Found the following executable files:
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check (ubuntu-latest, release)
Found the following files with non-portable file names:
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check (ubuntu-latest, release)
Found the following significant warnings:
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check (ubuntu-latest, release)
Loading required package: BPCells
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check (ubuntu-latest, release)
'::' or ':::' imports not declared from:
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check (ubuntu-latest, release)
vrMainFeatureType<-:
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check (ubuntu-latest, release)
Undocumented code objects:
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check (ubuntu-latest, release)
Found the following file(s) containing GNU extensions:
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