Merge pull request #6 from BIMSBbioinfo/dev #65
Annotations
5 errors and 35 warnings
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Setup R from r-lib
No such keg: /opt/homebrew/Cellar/[email protected]
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Run CMD check
package or namespace load failed for ‘VoltRon’ in .requirePackage(package):
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R CMD check found ERRORs
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Test failures
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Process completed with exit code 1.
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Install dependencies
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
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Install dependencies
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
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Install dependencies
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install dependencies
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install dependencies
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused variable ‘i’ declared at (1) [-Wunused-variable]
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Install dependencies
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘ifmt’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused variable ‘j’ declared at (1) [-Wunused-variable]
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Install macOS system dependencies
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
harfbuzz 10.2.0 is already installed and up-to-date.
To reinstall 10.2.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Install macOS system dependencies
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Setup R from r-lib
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Setup R from r-lib
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Install Suggested dependencies
undefined slot classes in definition of "ZarrArray": seed(class "Array_OR_array_OR_df")
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Install Suggested dependencies
undefined slot classes in definition of "ZarrMatrix": seed(class "Array_OR_array_OR_df")
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Install Suggested dependencies
ImageArray-package.Rd:26: All text must be in a section
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Install Suggested dependencies
replacing previous import ‘pizzarr::slice’ by ‘IRanges::slice’ when loading ‘ZarrArray’
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Run CMD check
Found the following significant warnings:
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Loading required package: BPCells
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trying URL 'https://downloads.openmicroscopy.org/bio-formats/7.3.0/artifacts/bioformats_package.jar'
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vrMainFeatureType<-:
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Undocumented code objects:
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Matrix compression performs poorly with non-integers.
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Converting to a dense matrix may use excessive memory
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