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  • Medical University of South Carolina

Achievements

Achievement: QuickdrawAchievement: Pull Shark

Achievements

Achievement: QuickdrawAchievement: Pull Shark

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BenCaiello/README.md

  • Hi, I’m @BenCaiello

  • I have a background in Biological / Medical Research Sciences, with experience in "wet labs" doing cell-culture and other molecular biology experiments.

  • Employed as a Laboratory Technologist to operate mass cytometry and imaging mass cytometry equipment at the Medical Univeristy of South Carolina

  • I’m currently learning code and packages (predominantly R, Python, & some GUI based tools) for the analysis of Mass Cytometry and Imaging Mass Cytometry data

    • Goal: be able to help core users with the analysis of their IMC data and develop a standardized pipeline for analysis offered by the core

  • How to reach me: here

Popular repositories Loading

  1. IMC_Denoise_integrated_to_steinbock IMC_Denoise_integrated_to_steinbock Public

    Forked from PENGLU-WashU/IMC_Denoise

    IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications

    Jupyter Notebook 2

  2. BenCaiello BenCaiello Public

    Config files for my GitHub profile.

  3. REDSEA_python_steinbock_Mesmer_masks REDSEA_python_steinbock_Mesmer_masks Public

    Forked from nolanlab/REDSEA

    Python script for REDSEA with new Steinbock / DeepCell masks

    Jupyter Notebook

  4. simpledeepcell simpledeepcell Public

    This is a mini-package intended for publication on pip that contains directly copied code from deepcell-tf / deepcell-toolbox, but only the portions needed to run Mesmer, as required by steinbock.

    Python

  5. MyFrozenFlowSOM MyFrozenFlowSOM Public

    Forked from saeyslab/FlowSOM_Python

    The complete FlowSOM package known from R, now available in Python! -- For my PALMETTOBUG project -- needs to eventually be on pip (whether by me in the last resort or by a compatible, official upd…

    Python