Launch RStudio Instance #6

	name: Launch RStudio Instance

	on:
	workflow_dispatch:
	inputs:
	username:
	description: 'Username for the RStudio instance'
	required: true
	type: string
	bioc_version:
	description: 'Bioconductor version (e.g., 3.18, 3.19, 3.20)'
	required: false
	default: '3.20'
	type: string

	env:
	BIOC_HUBSINGEST_PATH: "${{ github.workspace }}"

	jobs:
	launch-rstudio:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: save kubeconfig
	shell: bash
	run: mkdir -p ~/.kube && echo "${{ secrets.KUBECONFIG }}" > ~/.kube/config

	- name: Install Kubectl
	run: \|
	curl -LO "https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl" && \
	chmod +x ./kubectl && \
	sudo mv ./kubectl /usr/local/bin/kubectl && \
	kubectl version

	- name: Set up environment
	run: \|
	ACTOR_UPPER=$(echo "${{ github.actor }}" \| tr '[:lower:]' '[:upper:]')
	echo "SECRET_NAME=ADMINPASS_${ACTOR_UPPER}" >> $GITHUB_ENV

	- name: Launch RStudio
	run: \|
	bash install_hubsingest.sh
	export PATH="$PATH:$BIOC_HUBSINGEST_PATH"
	hubsingest launch_rstudio "${{ inputs.username }}" "${{ secrets[env.SECRET_NAME] }}" "${{ inputs.bioc_version }}"

	- name: Wait for RStudio and certificate
	run: \|
	kubectl wait -n "${{ inputs.username }}-ns" --for=condition=ready pod -l app=rstudio --timeout=300s
	kubectl wait -n "${{ inputs.username }}-ns" --for=condition=ready certificate ${{ inputs.username }}-rstudio-tls --timeout=600s

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