Launch RStudio Instance #14
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| name: Launch RStudio Instance | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| username: | |
| description: 'Username for the RStudio instance' | |
| required: true | |
| type: string | |
| bioc_version: | |
| description: 'Bioconductor version (e.g., 3.18, 3.19, 3.20)' | |
| required: false | |
| default: '3.20' | |
| type: string | |
| env: | |
| BIOC_HUBSINGEST_PATH: "${{ github.workspace }}" | |
| jobs: | |
| launch-rstudio: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: save kubeconfig | |
| shell: bash | |
| run: mkdir -p ~/.kube && echo "${{ secrets.KUBECONFIG }}" > ~/.kube/config | |
| - name: Install Kubectl | |
| run: | | |
| curl -LO "https://storage.googleapis.com/kubernetes-release/release/v1.24.4/bin/linux/amd64/kubectl" && \ | |
| chmod +x ./kubectl && \ | |
| sudo mv ./kubectl /usr/local/bin/kubectl && \ | |
| kubectl version | |
| - name: Set up environment | |
| run: | | |
| ACTOR_UPPER=$(echo "${{ github.actor }}" | tr '[:lower:]' '[:upper:]') | |
| USERNAME_LOWER=$(echo "${{ inputs.username }}" | tr '[:upper:]' '[:lower:]') | |
| echo "SECRET_NAME=ADMINPASS_${ACTOR_UPPER}" >> $GITHUB_ENV | |
| echo "USERNAME=${USERNAME_LOWER}" >> $GITHUB_ENV | |
| - name: Launch RStudio | |
| run: | | |
| bash install_hubsingest.sh | |
| export PATH="$PATH:$BIOC_HUBSINGEST_PATH" | |
| hubsingest launch_rstudio "${{ env.USERNAME }}" "${{ secrets[env.SECRET_NAME] }}" "${{ inputs.bioc_version }}" | |
| - name: Wait for RStudio and certificate | |
| run: | | |
| kubectl wait -n "${{ env.USERNAME }}-ns" --for=condition=ready pod -l app=rstudio --timeout=300s | |
| kubectl wait -n "${{ env.USERNAME }}-ns" --for=condition=ready certificate ${{ env.USERNAME }}-rstudio-tls --timeout=600s | |
| echo "RStudio is available at: https://${{ env.USERNAME }}-rstudio.hubsingest.bioconductor.org" |