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@BioinfoJavierreLab

Bioinfo JavierreLab

We are a group of passionate bioinformaticians with an insatiable thirst for learning computational pipelines about spatio-temporal organization of the genome

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  1. PCHiC-specificity-score-analysis PCHiC-specificity-score-analysis Public

    Forked from Steven-M-Hill/PCHiC-specificity-score-analysis

    Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).

    R

  2. cutandrun cutandrun Public

    Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    Nextflow

  3. vsn-pipelines vsn-pipelines Public

    Forked from vib-singlecell-nf/vsn-pipelines

    A repository of pipelines for single-cell data in Nextflow DSL2

    Nextflow

  4. scCut-Tag_2020 scCut-Tag_2020 Public

    Forked from Castelo-Branco-lab/scCut-Tag_2020

    Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)

    R

  5. CUTAG_lib CUTAG_lib Public

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • CUTAG_lib Public
    BioinfoJavierreLab/CUTAG_lib’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 3, 2023
  • scCut-Tag_2020 Public Forked from Castelo-Branco-lab/scCut-Tag_2020

    Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)

    BioinfoJavierreLab/scCut-Tag_2020’s past year of commit activity
    R 0 9 0 0 Updated Mar 27, 2022
  • vsn-pipelines Public Forked from vib-singlecell-nf/vsn-pipelines

    A repository of pipelines for single-cell data in Nextflow DSL2

    BioinfoJavierreLab/vsn-pipelines’s past year of commit activity
    Nextflow 0 GPL-3.0 32 0 0 Updated Mar 22, 2022
  • cutandrun Public Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    BioinfoJavierreLab/cutandrun’s past year of commit activity
    Nextflow 0 MIT 50 0 0 Updated Mar 17, 2022
  • PCHiC-specificity-score-analysis Public Forked from Steven-M-Hill/PCHiC-specificity-score-analysis

    Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).

    BioinfoJavierreLab/PCHiC-specificity-score-analysis’s past year of commit activity
    R 0 GPL-3.0 3 0 0 Updated Jun 4, 2021

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