FARCI provides an efficient implementation of neuronal connectome inference from Calcium imaging neuronal activity data. FARCI outputs a partial correlation matrix, which is depicted as a circular graph, representing the neuronal connectome. When neuronal spatial information is available, the neuronal connectome also accounts for the position of neurons.
10 in-silico datasets with calcium fluorescence of neurons and ground truth network generated using NAOMi toolbox can be downloaded from here.
Meamardoost, S., Bhattacharya, M., Hwang, E.J., Komiyama, T., Mewes, C.K., Wang, L., Zhang, Y. and Gunawan, R., 2021. FARCI: Fast and Robust Connectome Inference. Abstract
This work is supported by funding from from NSF-HDR IDEAS Lab (funding # 1939987, 1940202, 1940162, 1939999, and 1939992).