fix: release draft variable #353
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| name: check smoke tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| smoke_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| database: [postgres, sqlite, mysql, sqlserver] # Matrix for database types | |
| services: | |
| postgres: | |
| image: postgres:17 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_PASSWORD: pw | |
| mysql: | |
| image: mysql:8 | |
| ports: | |
| - 3306:3306 | |
| env: | |
| MYSQL_ROOT_PASSWORD: pw | |
| sqlserver: | |
| image: mcr.microsoft.com/mssql/server:2022-latest | |
| ports: | |
| - 1433:1433 | |
| env: | |
| ACCEPT_EULA: Y | |
| SA_PASSWORD: "YourStrong!Passw0rd" | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build RecordLinker Docker Image | |
| run: | | |
| docker build -t rl-service-image . | |
| - name: Start RecordLinker Service and Run Smoke Tests | |
| run: | | |
| if [[ "${{ matrix.database }}" == "postgres" ]]; then | |
| export DB_URI="postgresql+psycopg2://postgres:pw@localhost:5432/postgres" | |
| elif [[ "${{ matrix.database }}" == "sqlite" ]]; then | |
| export DB_URI="sqlite:///testdb.sqlite3" | |
| elif [[ "${{ matrix.database }}" == "mysql" ]]; then | |
| export DB_URI="mysql+pymysql://root:pw@localhost:3306/mysql" | |
| elif [[ "${{ matrix.database }}" == "sqlserver" ]]; then | |
| export DB_URI="mssql+pyodbc://sa:YourStrong!Passw0rd@localhost:1433/master?driver=ODBC+Driver+18+for+SQL+Server&TrustServerCertificate=yes" | |
| fi | |
| # Start Record Linker Service | |
| docker run -d --name rl-service \ | |
| --network="host" \ | |
| -e DB_URI=$DB_URI \ | |
| rl-service-image | |
| # Wait for the RL Service to be healthy | |
| TRIES=5 | |
| COUNT=0 | |
| until curl -s http://localhost:8080/ | grep "OK"; do | |
| echo "Waiting for RL Service to become healthy... Attempt $((COUNT+1)) of $TRIES" | |
| sleep 5 | |
| COUNT=$((COUNT+1)) | |
| if [ "$COUNT" -ge "$TRIES" ]; then | |
| echo "RL Service did not become healthy in time." | |
| exit 1 | |
| fi | |
| done | |
| # Run smoke tests and print the response | |
| JSON_BODY_1='{"record": {"birth_date": "2053-11-07", "sex": "M", "identifiers":[{"value": "123456789", "type": "MR"}], "name":[{"family":"Shepard", "given":["John"]}]}}' | |
| JSON_BODY_2='{"algorithm": "dibbs-enhanced", "record": {"birth_date": "2000-12-06", "sex": "M", "identifiers":[{"value": "9876543210", "type": "MR"}], "name":[{"family":"Smith", "given":["William"]}]}}' | |
| #basic tests | |
| RESPONSE_1=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_1" | |
| echo "$RESPONSE_1" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_1" | jq -r '.person_reference_id') | |
| RESPONSE_2=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_2" | |
| echo "$RESPONSE_2" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_2" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #enhanced tests | |
| RESPONSE_3=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_3" | |
| echo "$RESPONSE_3" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_3" | jq -r '.person_reference_id') | |
| RESPONSE_4=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_4" | |
| echo "$RESPONSE_4" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_4" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #invalid tests | |
| RESPONSE_5=$(curl -s -X POST http://localhost:8080/link \ | |
| -d '{"algorithm": "invalid", "record": {}}' \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_5" | |
| echo "$RESPONSE_5" | grep -q "No algorithm found" |