Skip to content

Issues: CDCgov/phoenix

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

14 Open 51 Closed
14 Open 51 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add Reformatted MLST Output Columns for NCBI Submissions to PHoeNIx WDL Workflow - requested enhancement
#183 opened Jan 23, 2025 by frankambrosio3
Add n50 Value Output Column to PHoeNIx WDL Workflow - requested enhancement
#182 opened Jan 23, 2025 by frankambrosio3
Podman support - requested enhancement Enhancement New feature or request
#181 opened Jan 22, 2025 by jvhagey
@jvhagey
Documentation for reference databases documentation Improvements or additions to documentation
#180 opened Jan 20, 2025 by slsevilla
@jvhagey
1
Error After Updating Nextflow and Phoenix Versions Tech Support Request Tech Support Request
#179 opened Dec 13, 2024 by Ashita2619
@jvhagey
11
Additional output columns needed for Terra.bio Enhancement New feature or request
#178 opened Dec 11, 2024 by jvhagey
@jvhagey
Considering Bakta for genome annotation - requested enhancement
#177 opened Dec 2, 2024 by vascokarla
@jvhagey
1
Refactor failed summary handling Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#152 opened Apr 4, 2024 by slsevilla
@jvhagey
1
Move params checks upstream to main.nf
#151 opened Apr 1, 2024 by slsevilla
1
handle failed samples via filtering
#147 opened Mar 28, 2024 by slsevilla
1 task
1
[BUG] - Resume flag restarts pipeline at SPADES, even if pipeline has completed downstream steps Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#129 opened Jan 20, 2024 by slsevilla
2
Create message/output when downstream and QC analysis is not complete or is interrupted due to taxa not assigned (taxa is not bacterial) Enhancement New feature or request
#123 opened Oct 2, 2023 by MOREYCK
@jvhagey
1
pigz error in PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK process on GCP VM Bug: System Specific Something isn't working, specific to certain systems
#120 opened Aug 18, 2023 by kprus
@jvhagey
6
Singe-end analysis - requested enhancement Enhancement New feature or request
#87 opened Feb 20, 2023 by AroobAlhumaidy
1
ProTip! Adding no:label will show everything without a label.