Dthoward96 org id patch (#42)

* Update cov_config.yaml remove org_id from examples * Update flu_config.yaml remove org_id from examples * Update create.py remove org_id from xml creation
CDCgov · Mar 8, 2024 · 3f6433d · 3f6433d
1 parent 6e95bd3
commit 3f6433d
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diff --git a/create.py b/create.py
@@ -111,8 +111,6 @@ def create_submission_xml(organism, database, submission_name, config_dict, meta
 	comment.text = config_dict["Description"]["Comment"]
 	# Description info including organization and contact info
 	organization = etree.SubElement(description, "Organization", type=config_dict["Description"]["Organization"]["@type"], role=config_dict["Description"]["Organization"]["@role"])
-	if config_dict["Description"]["Organization"]["@org_id"]:
-		organization.set("org_id", config_dict["Description"]["Organization"]["@org_id"])
 	org_name = etree.SubElement(organization, "Name")
 	org_name.text = config_dict["Description"]["Organization"]["Name"]
 	if "GENBANK" not in database:

diff --git a/template/COV/cov_config.yaml b/template/COV/cov_config.yaml
@@ -10,7 +10,6 @@ Submission:
       Organization:
         '@role': owner
         '@type': institute
-        '@org_id': 12345
         Name: CDC
         Address:
            Affil: Centers for Disease Control and Prevention

diff --git a/template/FLU/flu_config.yaml b/template/FLU/flu_config.yaml
@@ -9,7 +9,6 @@ Submission:
       Organization:
         '@role': owner
         '@type': institute
-        '@org_id': 12345
         Name: CDC
         Address:
            Affil: Centers for Disease Control and Prevention