change container from seqsender to tostadas

CDCgov · Apr 5, 2024 · f64abae · f64abae
1 parent 7495025
commit f64abae
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/modules/local/initial_submission/main_full.nf b/modules/local/initial_submission/main_full.nf
@@ -11,7 +11,7 @@ process SUBMISSION_FULL {
 
     conda (params.enable_conda ? params.env_yml : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev' }"
+        'staphb/tostadas:latest' : 'staphb/tostadas:latest' }"
 
     input:
     tuple val(meta), path(validated_meta_path), path(fasta_path), path(fastq_1), path(fastq_2), path(annotations_path)

diff --git a/modules/local/initial_submission/main_genbank.nf b/modules/local/initial_submission/main_genbank.nf
@@ -11,7 +11,7 @@ process SUBMISSION_GENBANK {
 
     conda (params.enable_conda ? params.env_yml : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev' }"
+        'staphb/tostadas:latest' : 'staphb/tostadas:latest' }"
 
     input:
     tuple val(meta), path(validated_meta_path), path(fasta_path), path(annotations_path)

diff --git a/modules/local/initial_submission/main_sra.nf b/modules/local/initial_submission/main_sra.nf
@@ -11,7 +11,7 @@ process SUBMISSION_SRA {
 
     conda (params.enable_conda ? params.env_yml : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev'  }"
+        'staphb/tostadas:latest' : 'staphb/tostadas:latest'  }"
 
     input:
     tuple val(meta), path(validated_meta_path), path(fastq_1), path(fastq_2)