Complex Navigator and machine predicted complexes integration

• Complex Portal Navigator view on search results and basket
• Integration of Hu.MAP 3.0 machine predicted complexes
• Improvements on search results filters

First version of evidence section and publication and names section, clean up and a few bug fixes

The release was mainly to introduce two new sections:

• Added Evidence section which show IntAct evidences and ECO codes.
• Publications and Names section which show PMID, names and synonyms.
• The complex viewer has now a light grey background.
• A few typo and bug fixes.

Organism view

This was a specific feature release:

• Released a organism view, which show all the existing complex organism. There we can download the files, see the count or go to a direct filter of a organism.

First version of basket, new tiles and search box and major clean up. Ah! And a loading bar! ;-)

This release is about several things:

• We have introduced a basket area, which allows to save complexes. From the basket area we can see our 'Personal Complex Collection'. We plan to add more functionality to this later, like a custom download.
• Working together with the UI team, we have changed the looks of the search and the search box. This is supposed to make it more visible.
• Also, we did a major clean up, using lint but also removing components because of simplicity. Also we updated to ng-cli 1.0.0-rc4 and updated a few dependencies.
• We have introduced the ng-material library, which is the standard UI lib for angular. This library we mostly bring in to get nice loading animations. Currently you will see a greenish bar underneath the header, which shows up after each route change.

New flag selection for Reactome PDW and expandable lists/tables

This release is about two issues:

• Antonio has advised to use the flagItem instead of the selectItem. This because this selection is more accurate, as the initial one. It will still highlight the sub-pathway, but also highlight the select pathways in purple.
• All the list like synonyms, EFOs, participants, etc., are now limited to 5 items. This avoids massive long tables on load. Instead we offer a 'Show all'-button, which will load the rest on demand.

Reactome Pathway Diagram, Species italic, Agonist & Antagonist, etc.

We have done some more minor clean up, but we have also added and changed a few things.

• The Reactome Pathway Diagram is now fixed and goes down to the complex and not just the sub-pathway.
• The Reactome Pathway Diagram is now resizable and uses more space. We hope that this is enough space to use the Diagram.
• Added Agonist and Antagonist
• EFO XRef were only covering the Orphranet XRefs, but not the EFO XRefs itself. This is now solved.
• Moved Intenz XRefs out of the same section as synonyms and systematic name.
• Using the pagination tool on the bottom (results page), will bring you now back to the top of the page.
• If we can't match any of your search terms, we'll display an error message.

https://complex-portal.github.io/complex-portal-view/home

Minor fixes & clean up

We did a few minor fixes and clean ups.

• All third party URLs or now referenced in the environment files.
• Removed for in loop
• Stopped importing whole rxjs lib and only the bits we need
• General clean up using ts lint

First working version of CP

This is a first version of the new CP. Still a beta, but we can play with it. The search is working, a results page and filters are in place and also have a details page. The details page shows most of the visualisations, but is still missing some functionality.