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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,132 @@ | ||
| version: 2.0 | ||
| jobs: | ||
| "14.04": | ||
| docker: | ||
| - image: circleci/buildpack-deps:14.04 | ||
| working_directory: /home/circleci/DEploid | ||
| steps: | ||
| - checkout | ||
| - run: sudo chown -R circleci:circleci * | ||
| - restore_cache: | ||
| key: dEploid-{{ .Branch }} | ||
| - run: | ||
| name: Checkout submodules | ||
| command: | | ||
| git submodule update --init --recursive --remote | ||
| - run: | ||
| name: Install dependencies and set path | ||
| command: | | ||
| sudo apt-get update | ||
| curl -fsSL https://git.io/vHGMF | bash | ||
| sudo apt-get install libcppunit-dev | ||
| sudo apt-get install valgrind | ||
| - run: | ||
| name: Getting ready | ||
| command: | | ||
| g++ --version | ||
| ./bootstrap | ||
| - run: | ||
| name: Compile | ||
| command: | | ||
| make | ||
| sudo make install | ||
| make check | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| ./tests/test_binary.sh | ||
| ./tests/testPOS.sh | ||
| ./tests/test_binaryVcfVsTxt.sh | ||
| ./tests/test-against-previous-version.sh | ||
| ./tests/test_binaryReproducible.sh | ||
| #- valgrind --leak-check=full -v --show-leak-kinds=all ./unit_tests | ||
| #- coveralls --exclude lib --exclude tests --exclude src/random --exclude src/codeCogs/ --exclude src/export/ --gcov-options '\-lp' | ||
|
|
||
| "16.04": | ||
| docker: | ||
| - image: circleci/buildpack-deps:16.04 | ||
| working_directory: /home/circleci/DEploid | ||
| steps: | ||
| - checkout | ||
| - run: sudo chown -R circleci:circleci * | ||
| - restore_cache: | ||
| key: dEploid-{{ .Branch }} | ||
| - run: | ||
| name: Checkout submodules | ||
| command: | | ||
| git submodule update --init --recursive --remote | ||
| - run: | ||
| name: Install dependencies and set path | ||
| command: | | ||
| sudo apt-get update | ||
| curl -fsSL https://git.io/vHGMF | bash | ||
| sudo apt-get install libcppunit-dev | ||
| sudo apt-get install valgrind | ||
| - run: | ||
| name: Getting ready | ||
| command: | | ||
| g++ --version | ||
| ./bootstrap | ||
| - run: | ||
| name: Compile | ||
| command: | | ||
| make | ||
| sudo make install | ||
| make check | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| ./tests/test_binary.sh | ||
| ./tests/testPOS.sh | ||
| ./tests/test_binaryVcfVsTxt.sh | ||
| ./tests/test-against-previous-version.sh | ||
| ./tests/test_binaryReproducible.sh | ||
| "20.04": | ||
| docker: | ||
| - image: circleci/buildpack-deps:20.04 | ||
| working_directory: /home/circleci/DEploid | ||
| steps: | ||
| - checkout | ||
| - run: sudo chown -R circleci:circleci * | ||
| - restore_cache: | ||
| key: dEploid-{{ .Branch }} | ||
| - run: | ||
| name: Checkout submodules | ||
| command: | | ||
| git submodule update --init --recursive --remote | ||
| - run: | ||
| name: Install dependencies and set path | ||
| command: | | ||
| sudo apt-get update | ||
| curl -fsSL https://git.io/vHGMF | bash | ||
| sudo apt-get install libcppunit-dev | ||
| sudo apt-get install valgrind | ||
| - run: | ||
| name: Getting ready | ||
| command: | | ||
| g++ --version | ||
| ./bootstrap | ||
| - run: | ||
| name: Compile | ||
| command: | | ||
| make | ||
| sudo make install | ||
| make check | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| ./tests/test_binary.sh | ||
| ./tests/testPOS.sh | ||
| ./tests/test_binaryVcfVsTxt.sh | ||
| ./tests/test-against-previous-version.sh | ||
| ./tests/test_binaryReproducible.sh | ||
| workflows: | ||
| version: 2 | ||
| build: | ||
| jobs: | ||
| - "20.04" | ||
| # - "14.04" | ||
| # - "16.04" |