adding test binary file

tests/test_binary.sh

@@ -0,0 +1,36 @@
+#!/bin/bash
+
+function test_noRepeat {
+  echo -n " vcf $@ "
+  # Test using vcf self-checks
+  ./vcf_dbg $@ > /dev/null
+  if [ $? -ne 0 ]; then
+    echo ""
+    echo "Executing \"./vcf_dbg $@ \" failed."
+    echo "Debug Call: make -mj2 vcf_dbg && ./vcf_dbg $@ 2>&1 | less"
+    exit 1
+  fi
+
+  # Test for memory leaks
+  valgrind --error-exitcode=1 --leak-check=full -q --gen-suppressions=yes ./vcf $@ > /dev/null
+  if [ $? -ne 0 ]; then
+    echo ""
+    echo "Valgrind check of \"valgrind --error-exitcode=1 --leak-check=full -q --gen-suppressions=yes ./vcf $@ \" failed."
+    exit 1
+  fi
+
+  echo " done."
+}
+
+sameFlags="data/testData/PG0390-C.test.vcf"
+
+echo "Testing examples"
+ # vcf.gz test wouldn't work, due to zlib version is 1.2.3.4 on travis and circle. it is difficult to update.
+ #test_vcf ${sameFlags} -vcf data/testData/PG0390-C.test.vcf.gz -noPanel -o tmp1 || exit 1
+ test_noRepeat ${sameFlags}
+ # The following test takes long time, turn off on travis for now ...
+ #test_vcf ${sameFlags} -vcf data/testData/PG0390-C.test.vcf -panel data/testData/labStrains.test.panel.txt -o tmp2 -painting tmp1.hap || exit 1
+ #test_vcf ${sameFlags} -vcf data/testData/PG0390-C.test.vcf -panel data/testData/labStrains.test.panel.txt -o tmp1 || exit 1
+ #test_vcf ${sameFlags} -ref data/testData/PG0390-C.test.ref -alt data/testData/PG0390-C.test.alt -noPanel -o tmp1 || exit 1
+ #test_vcf ${sameFlags} -ref data/testData/PG0390-C.test.ref -alt data/testData/PG0390-C.test.alt -panel data/testData/labStrains.test.panel.txt -o tmp1 || exit 1
+echo ""