update, v0.0.2

DEploid-dev · Dec 23, 2024 · 2a17d93 · 2a17d93
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Showing 21 changed files with 7 additions and 3 deletions.
diff --git a/DEploid-Utilities.Rproj b/DEploid-Utilities.Rproj
diff --git a/LICENSE.md b/LICENSE.md
diff --git a/NAMESPACE b/NAMESPACE
diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
-# DEploid.utils 0.0.0.9000
+# DEploid.utils v0.0.2
 
-* First release.
+ * Use submodules to manage code.
+
+# DEploid.utils v0.0.1
+
+ * First release.
diff --git a/R/deploid_utils.R b/R/deploid_utils.R
diff --git a/R/interface.R b/R/interface.R
diff --git a/man/computeObsWSAF.Rd b/man/computeObsWSAF.Rd
diff --git a/man/extractCoverageFromTxt.Rd b/man/extractCoverageFromTxt.Rd
diff --git a/man/extractCoverageFromVcf.Rd b/man/extractCoverageFromVcf.Rd
diff --git a/man/extractPLAF.Rd b/man/extractPLAF.Rd
diff --git a/man/haplotypePainter.Rd b/man/haplotypePainter.Rd
diff --git a/man/histWSAF.Rd b/man/histWSAF.Rd
diff --git a/man/plotAltVsRef.Rd b/man/plotAltVsRef.Rd
diff --git a/man/plotObsExpWSAF.Rd b/man/plotObsExpWSAF.Rd
diff --git a/man/plotProportions.Rd b/man/plotProportions.Rd
diff --git a/man/plotWSAFvsPLAF.Rd b/man/plotWSAFvsPLAF.Rd
diff --git a/src/vcf b/src/vcf
diff --git a/tests/testthat.R b/tests/testthat.R
diff --git a/tests/testthat/setup.R b/tests/testthat/setup.R
diff --git a/tests/testthat/test-extractFromVCF.R b/tests/testthat/test-extractFromVCF.R
diff --git a/tests/testthat/test-vcfreader.R b/tests/testthat/test-vcfreader.R