Cran release

DESCRIPTION

@@ -1,10 +1,10 @@
 Package: DEploid.utils
 Title: Utility Functions for 'DEploid' Data Analysis and Results Interpretation  
-Version: 0.0.0.9000
+Version: 0.0.1
 Authors@R: 
     person("Joe", "Zhu", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-7566-2787"))
-Description: 'dEploid' is designed for deconvoluting mixed genomes with unknown 
+Description: 'DEploid' is designed for deconvoluting mixed genomes with unknown 
     proportions. Traditional ‘phasing’ programs are limited to diploid organisms. 
     Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo
     (MCMC) approaches, and builds a generic framework that allows haloptype
@@ -22,7 +22,6 @@ Suggests:
     rmarkdown(>= 1.6),
     circlize,
     testthat (>= 0.9.0)
-VignetteBuilder: knitr
 LinkingTo: Rcpp
 RoxygenNote: 7.3.2
 Encoding: UTF-8

src/vcf/vcfReader.cpp

@@ -458,10 +458,10 @@ void VariantLine::extract_field_VARIANT() {
                 alt = maybe_dot_to_integer(alt_AD);
                 break;
             }
-            catch (std::exception& e) {
-                std::cerr << "Error parsing vcf AD field: '"
-                          << adStr << "':  " << e.what() << "\n";
-                //exit(1);
+            catch (const std::exception& e) {
+              throw std::runtime_error(
+                  "Error parsing vcf AD field: '" +
+                    adStr + "':  " + e.what() + "\n");
             }
         }
         feild_start = field_end+1;