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Fixes bugs (spectroscopy, inelastic SAS), adds disjoints, no inferred…
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… axioms.

Motivation:
Small change that fixes some errors and enables disjoint class relationship (which in turn helps to identify logical inconsistencies, such as a technique being simultaneously  elastic and inelastic.
The issues addressed are outlined in Milestone-1 and documented below.

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change the label from 'photoemission microscopy' to 'photoemission electron microscopy' (as the preferred name)
add 'PEEM' (already included) and 'photoelectron emission microscopy' as alternative names

Also needed to:
change two references to 'photoemission microscopy' to be 'photoemission electron microscopy'
change 'x-ray photoemission microscopy' to 'x-ray photoemission electron microscopy'

Closes: #54
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The name for term PaNET01107 reads inelastic small angle scatteringng. I suspect this is a typo.

Label changed to 'inelastic small angle scattering'

Closes: #76
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			delete equivalent class 'versus energy'
			replace subclass (of) 'defined by functional dependence' with subclass 'versus energy'
			Note: This changes the definition of PaNET01165 (MAD) so it is no longer a spectroscopy
			Note: subclass of 'defined by functional dependence' is no longer required as 'versus energy' is already a subclass of 'defined by functional dependence'

Closes: #53

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Error in PaNET01107 (inelastic small angle scattering)

Change made:
'small angle scattering' (PaNET01124) should be a subclass of 'low momentum transfer scattering' but not 'diffraction'

Closes: #104

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Achieved by adding a 'DC %' column in the csv file (new column Q in csv spreadsheet).

Closes #105
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Change to definition of PaNET01034 ('inelastic scattering') to be disjoint with PaNET01020 ('elastic scattering')

Closes #106
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spc93 committed Apr 11, 2024
1 parent 6a0b629 commit 7c268a6
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36 changes: 13 additions & 23 deletions source/PaNET.csv
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
,ID,Label,Alt Label 1,Alt Label 2,Definition,Definition Source,RDF Type,Class Type,Parent IRI,Parent IRI,Parent IRI,Parent IRI,Parent IRI,Equivalent ,Equivalent ,Individual,Property Assertions,
,ID,A rdfs:label,A http://www.w3.org/2004/02/skos/core#altLabel,A http://www.w3.org/2004/02/skos/core#altLabel,A IAO:0000115,A IAO:0000119,TYPE,CLASS_TYPE,CI,CI,CI,CI,CI,EC %,EC %,TI %,I 'hasTechnique',
,ID,Label,Alt Label 1,Alt Label 2,Definition,Definition Source,RDF Type,Class Type,Parent IRI,Parent IRI,Parent IRI,Parent IRI,Parent IRI,Equivalent ,Equivalent ,Disjoint Classes,Individual,Property Assertions
,ID,A rdfs:label,A http://www.w3.org/2004/02/skos/core#altLabel,A http://www.w3.org/2004/02/skos/core#altLabel,A IAO:0000115,A IAO:0000119,TYPE,CLASS_TYPE,CI,CI,CI,CI,CI,EC %,EC %,DC %,TI %,I 'hasTechnique'
,,,,,,,,,,,,,,,,,,
Base IRI,,http://purl.org/pan-science/PaNET/,,,,,,,,,,,,,,,,
Root name,,PaNET,,,,,,,,,,,,,,,,
Expand Down Expand Up @@ -88,7 +88,7 @@ ID number,,,,,,,,,,,,,,,,,,
1031,http://purl.org/pan-science/PaNET/PaNET01031,atomic scale diffraction 2D surface or film,,,,,owl:Class,subclass,atomic scale diffraction,,,,,,,,,
1032,http://purl.org/pan-science/PaNET/PaNET01032,micro scale diffraction,,,,,owl:Class,subclass,diffraction,,,,,,,,,
1033,http://purl.org/pan-science/PaNET/PaNET01033,incoherent scattering,,,,https://en.wikipedia.org/wiki/Incoherent_scatter,owl:Class,subclass,scattering technique,,,,,,,,,
1034,http://purl.org/pan-science/PaNET/PaNET01034,inelastic scattering,,,,https://en.wikipedia.org/wiki/Inelastic_scattering,owl:Class,subclass,incoherent scattering,,,,,,,,,
1034,http://purl.org/pan-science/PaNET/PaNET01034,inelastic scattering,,,,https://en.wikipedia.org/wiki/Inelastic_scattering,owl:Class,subclass,incoherent scattering,,,,,,,elastic scattering,,
1035,http://purl.org/pan-science/PaNET/PaNET01035,quasielastic scattering,,,,https://en.wikipedia.org/wiki/Quasielastic_neutron_scattering,owl:Class,subclass,inelastic scattering,,,,,,,,,
1036,http://purl.org/pan-science/PaNET/PaNET01036,high momentum transfer scattering,,,,,owl:Class,subclass,scattering technique,,,,,,,,,
1037,http://purl.org/pan-science/PaNET/PaNET01037,low momentum transfer scattering,,,,,owl:Class,subclass,scattering technique,,,,,,,,,
Expand Down Expand Up @@ -161,7 +161,7 @@ ID number,,,,,,,,,,,,,,,,,,
1104,http://purl.org/pan-science/PaNET/PaNET01104,high resolution photoelectron spectroscopy,,,,,owl:Class,subclass,spectroscopy,photoelectron emission,versus emitted energy,high energy resolution emission technique,,,,,,
1105,http://purl.org/pan-science/PaNET/PaNET01105,holography,,,,https://en.wikipedia.org/wiki/Holography,owl:Class,subclass,reference beam,imaging,,,,,,,,
1106,http://purl.org/pan-science/PaNET/PaNET01106,imaging,,,,,owl:Class,subclass,defined by functional dependence,,,,,obtain spatial map,,,,
1107,http://purl.org/pan-science/PaNET/PaNET01107,inelastic small angle scatteringng,inelastic SAS,,,,owl:Class,subclass,inelastic scattering,small angle scattering,,,,,,,,
1107,http://purl.org/pan-science/PaNET/PaNET01107,inelastic small angle scattering,inelastic SAS,,,,owl:Class,subclass,inelastic scattering,small angle scattering,,,,,,,,
1108,http://purl.org/pan-science/PaNET/PaNET01108,inelastic scattering spectroscopy,,,,,owl:Class,subclass,inelastic scattering,versus energy loss,,,,,,,,
1109,http://purl.org/pan-science/PaNET/PaNET01109,infrared spectroscopy,IR spectroscopy,,,https://en.wikipedia.org/wiki/Infrared_spectroscopy,owl:Class,subclass,IR photon probe,spectroscopy,,,,,,,,
1110,http://purl.org/pan-science/PaNET/PaNET01110,infrared microspectroscopy,,,,,owl:Class,subclass,infrared spectroscopy,microscopy,,,,,,,,
Expand All @@ -178,8 +178,8 @@ ID number,,,,,,,,,,,,,,,,,,
1121,http://purl.org/pan-science/PaNET/PaNET01121,reflectometry,reflectivity,,,https://en.wikipedia.org/wiki/Reflectometry,owl:Class,subclass,reflection technique,versus momentum transfer,,,,,,,,
1122,http://purl.org/pan-science/PaNET/PaNET01122,resonant diffraction,anomalous scattering,anomalous diffraction,,,owl:Class,subclass,diffraction,atomic core excitation,resonant scattering,,,,,,,
1123,http://purl.org/pan-science/PaNET/PaNET01123,scanning transmission microscopy,STM,,,,owl:Class,subclass,absorption technique,versus position,scanning probe,microscopy,,,,,,
1124,http://purl.org/pan-science/PaNET/PaNET01124,small angle scattering,SAS,small angle diffraction,,https://en.wikipedia.org/wiki/Small-angle_scattering,owl:Class,subclass,low momentum transfer scattering,diffraction,,,,,,,,
1125,http://purl.org/pan-science/PaNET/PaNET01125,spectroscopy,,,,https://en.wikipedia.org/wiki/Spectroscopy,owl:Class,subclass,defined by functional dependence,,,,,versus energy,,,,
1124,http://purl.org/pan-science/PaNET/PaNET01124,small angle scattering,SAS,small angle diffraction,,https://en.wikipedia.org/wiki/Small-angle_scattering,owl:Class,subclass,low momentum transfer scattering,,,,,,,,,
1125,http://purl.org/pan-science/PaNET/PaNET01125,spectroscopy,,,,https://en.wikipedia.org/wiki/Spectroscopy,owl:Class,subclass,versus energy,,,,,,,,,
1126,http://purl.org/pan-science/PaNET/PaNET01126,spin echo resolved grazing incidence scattering,,,,,owl:Class,subclass,spin echo scattering,low surface momentum transfer scattering,,,,,,,,
1127,http://purl.org/pan-science/PaNET/PaNET01127,spin echo small angle scattering,spin echo SANS,,,,owl:Class,subclass,spin echo scattering,small angle scattering,,,,,,,,
1128,http://purl.org/pan-science/PaNET/PaNET01128,surface diffraction,,,,,owl:Class,subclass,atomic scale diffraction 2D surface or film,,,,,,,,,
Expand All @@ -200,7 +200,7 @@ ID number,,,,,,,,,,,,,,,,,,
1143,http://purl.org/pan-science/PaNET/PaNET01143,magnetochiral dichroism,MChD,,,,owl:Class,subclass,photon probe,versus polarization,chiral determination,magnetism technique,dichroism,,,,,
1144,http://purl.org/pan-science/PaNET/PaNET01144,natural circular dichroism,NCD,,,,owl:Class,subclass,photon probe,versus photon circular polarization,chiral determination,dichroism,,,,,,
1145,http://purl.org/pan-science/PaNET/PaNET01145,electron microscopy,EM,,,https://en.wikipedia.org/wiki/Electron_microscope,owl:Class,subclass,electron emission technique,microscopy,,,,,,,,
1146,http://purl.org/pan-science/PaNET/PaNET01146,photoemission microscopy,PEEM,photoemission electron microscopy,,https://en.wikipedia.org/wiki/Photoemission_electron_microscopy,owl:Class,subclass,photon probe,electron microscopy,,,,,,,,
1146,http://purl.org/pan-science/PaNET/PaNET01146,photoemission electron microscopy,PEEM,photoelectron emission microscopy,,https://en.wikipedia.org/wiki/Photoemission_electron_microscopy,owl:Class,subclass,photon probe,electron microscopy,,,,,,,,
1147,http://purl.org/pan-science/PaNET/PaNET01147,scanning probe imaging,,,,,owl:Class,subclass,versus position,scanning probe,imaging,,,,,,,
1148,http://purl.org/pan-science/PaNET/PaNET01148,scanning probe microscopy,scanning microscopy,,,,owl:Class,subclass,scanning probe imaging,microscopy,,,,,,,,
1149,http://purl.org/pan-science/PaNET/PaNET01149,x-ray reflectivity,XRR,x-ray reflectometry,,https://en.wikipedia.org/wiki/X-ray_reflectivity,owl:Class,subclass,x-ray probe,reflection technique,versus momentum transfer,,,,,,,
Expand Down Expand Up @@ -347,8 +347,8 @@ ID number,,,,,,,,,,,,,,,,,,
1290,http://purl.org/pan-science/PaNET/PaNET01290,x-ray diffraction imaging,,,,,owl:Class,subclass,diffraction imaging,x-ray probe,,,,,,,,
1291,http://purl.org/pan-science/PaNET/PaNET01291,scanning angle resolved photoemission spectromicroscopy,,,,,owl:Class,subclass,angle resolved photoemission spectroscopy,scanning probe microscopy,,,,,,,,
1292,http://purl.org/pan-science/PaNET/PaNET01292,nano angle resolved photoemission spectroscopy,nano ARPES,,,,owl:Class,subclass,scanning angle resolved photoemission spectromicroscopy,nanofocussed probe,,,,,,,,
1293,http://purl.org/pan-science/PaNET/PaNET01293,scanning photoelectron microscopy,,,,,owl:Class,subclass,photoemission microscopy,scanning probe,,,,,,,,
1294,http://purl.org/pan-science/PaNET/PaNET01294,x-ray photoemission microscopy,,,,,owl:Class,subclass,photoemission microscopy,x-ray probe,,,,,,,,
1293,http://purl.org/pan-science/PaNET/PaNET01293,scanning photoelectron microscopy,,,,,owl:Class,subclass,photoemission electron microscopy,scanning probe,,,,,,,,
1294,http://purl.org/pan-science/PaNET/PaNET01294,x-ray photoemission electron microscopy,,,,,owl:Class,subclass,photoemission electron microscopy,x-ray probe,,,,,,,,
1295,http://purl.org/pan-science/PaNET/PaNET01295,x-ray scanning microscopy,scanning x-ray microscopy,,,,owl:Class,subclass,x-ray microscopy,scanning probe,,,,,,,,
1296,http://purl.org/pan-science/PaNET/PaNET01296,high resolution core-level photoemission spectroscopy,,,,,owl:Class,subclass,high resolution photoelectron spectroscopy,atomic core excitation,,,,,,,,
1297,http://purl.org/pan-science/PaNET/PaNET01297,high resolution x-ray photoelectron spectroscopy,HR-XPS,,,,owl:Class,subclass,x-ray photoelectron spectroscopy,high resolution photoelectron spectroscopy,,,,,,,,
Expand Down Expand Up @@ -394,20 +394,10 @@ ID number,,,,,,,,,,,,,,,,,,
,PaNET:dataset,dataset,,,"A dataset in the domain of neutron, muon and accelerator-based light sources",,owl:Class,subclass,owl:Thing,,,,,,,,,
,PaNET:hasTechnique,hasTechnique,,,,,owl:ObjectProperty,,,,,,,,,,,
,PaNET:mySingleCrystalDiffractionTechnique,mySingleCrystalDiffractionTechnique,,,,,single crystal diffraction,,,,,,,,,,,
,PaNET:my_single_crystal_x-ray_diffraction_data_123,my_single_crystal_x-ray_diffraction_data_123,,,,,dataset,,,,,,,,,,mySingleCrystalDiffractionTechnique,
,PaNET:my_single_crystal_x-ray_diffraction_data_123,my_single_crystal_x-ray_diffraction_data_123,,,,,dataset,,,,,,,,,,,mySingleCrystalDiffractionTechnique
,PaNET:myHighResNeutronPowderDiffractionTechnique,myHighResNeutronPowderDiffractionTechnique,,,,,high resolution neutron powder diffraction,,,,,,,,,,,
,PaNET:my_neutron_powder_diffraction_diffraction_data_55,my_neutron_powder_diffraction_diffraction_data_55,,,,,dataset,,,,,,,,,,myHighResNeutronPowderDiffractionTechnique,
,PaNET:my_neutron_powder_diffraction_diffraction_data_55,my_neutron_powder_diffraction_diffraction_data_55,,,,,dataset,,,,,,,,,,,myHighResNeutronPowderDiffractionTechnique
,PaNET:myARPEStechnique,myARPEStechnique,,,,,angle resolved photoemission spectroscopy,,,,,,,,,,,
,PaNET:my_ARPES_data,my_ARPES_data,,,,,dataset,,,,,,,,,,myARPEStechnique,
,PaNET:my_ARPES_data,my_ARPES_data,,,,,dataset,,,,,,,,,,,myARPEStechnique
,PaNET:myMicrofocusX-rayAbsorptionSpectroscopyTechnique,myMicrofocusX-rayAbsorptionSpectroscopyTechnique,,,,,microfocus x-ray absorption spectroscopy,,,,,,,,,,,
,PaNET:my_microfocus_spectrosopy_data,my_microfocus_spectrosopy_data,,,,,dataset,,,,,,,,,,myMicrofocusX-rayAbsorptionSpectroscopyTechnique,
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,PaNET:my_microfocus_spectrosopy_data,my_microfocus_spectrosopy_data,,,,,dataset,,,,,,,,,,,myMicrofocusX-rayAbsorptionSpectroscopyTechnique
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