quick bug fix

Koeng101 · Oct 6, 2024 · 6847356 · 6847356
1 parent 0b725d7
commit 6847356
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/lib/synthesis/fragment/fragment.go b/lib/synthesis/fragment/fragment.go
@@ -293,7 +293,7 @@ func RecursiveFragment(sequence string, maxCodingSizeOligo int, assemblyPattern
 		}
 		var fragmentsAppended []string
 		for _, fragment := range fragments {
-			fragmentsAppended = append(fragmentsAppended, forwardFlank+fragment+reverseFlank)
+			fragmentsAppended = append(fragmentsAppended, fragment)
 		}
 		return Assembly{Sequence: sequence, Fragments: fragmentsAppended, Efficiency: efficiency}, nil
 	}

diff --git a/py/tests/test_fragment.py b/py/tests/test_fragment.py
@@ -42,4 +42,4 @@ def test_recursive_fragment():
     result = recursive_fragment(gene, max_oligo_len, assembly_pattern, exclude_overhangs, default_overhangs, "GTCTCT", "CGAG")
     assert result is not None, "RecursiveFragment failed"
     # Add more specific assertions based on the expected structure of the result
-    assert result.fragments == ['GTCTCTGTCTCTATGACCATGATTACGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCGAG', 'GTCTCTCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGCGAGCGAG']
+    assert result.fragments == ['GTCTCTATGACCATGATTACGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCGAG', 'CCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGCGAG']