resolve a few hdf5 asan issues related to cleanup during exceptions (#…

…1304)

* resolve a few hdf5 asan issues related to cleanup during exception

* add alloc cleanup logic for hdf5 variable string case

* add lsan supressions file

* add gh actions asan build recipe for build w/ mpi

* gactemu

.github/workflows/build_conduit_clang_asan.yml

@@ -0,0 +1,116 @@
+name: build_conduit_clang_asan
+
+on:
+  pull_request:
+    branches: [ develop ]
+
+jobs:
+  build_basic:
+    name: Ubuntu Build Conduit Clang Asan
+    runs-on: ubuntu-latest
+    env:
+      CC: clang
+      CXX: clang++
+      MPICH_CC: clang
+      MPICH_CXX: clang++
+      CFLAGS: "-fsanitize=address -DNDEBUG"
+      CXXFLAGS: "-fsanitize=address -DNDEBUG"
+    steps:
+    - name: Install System Deps
+      run: |
+           sudo apt-get update -y
+           sudo apt-get install -y binutils \
+                                   clang \
+                                   llvm \
+                                   python3 \
+                                   perl \
+                                   git \
+                                   git-lfs \
+                                   curl \
+                                   wget \
+                                   tar \
+                                   unzip \
+                                   build-essential \
+                                   libncurses-dev \
+                                   libssl-dev \
+                                   libblas-dev \
+                                   liblapack-dev \
+                                   zlib1g-dev \
+                                   libgdbm-dev \
+                                   libreadline-dev \
+                                   libsqlite3-dev \
+                                   libbz2-dev \
+                                   mpich \
+                                   libmpich-dev \
+                                   cmake
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        submodules: 'recursive'
+    - name: Build TPLs
+      run: |
+        env enable_mpi=OFF \
+            build_config=Debug \
+            enable_fortran=OFF \
+            enable_tests=OFF \
+            enable_verbose=OFF \
+            build_conduit=false \
+            build_jobs=4 \
+            prefix=tpls \
+            ./scripts/build_conduit/build_conduit.sh
+    # - name: Configure Conduit (MPI)
+    #   run: |
+    #     cmake --version
+    #     echo "**** Configuring Conduit"
+    #     # Note: for system clang + mpich, we need to pass
+    #     # mpi compiler wrappers are the c & cxx compilers
+    #     cmake -S src \
+    #           -B build \
+    #           -C tpls/conduit-config.cmake \
+    #           -DCMAKE_C_COMPILER=/usr/bin/mpicc \
+    #           -DCMAKE_CXX_COMPILER=/usr/bin/mpicxx \
+    #           -DENABLE_TESTS=ON \
+    #           -DCMAKE_INSTALL_PREFIX=install
+    - name: Configure Conduit
+      run: |
+        cmake --version
+        echo "**** Configuring Conduit"
+        cmake -S src \
+              -B build \
+              -C tpls/conduit-config.cmake \
+              -DENABLE_TESTS=ON \
+              -DCMAKE_INSTALL_PREFIX=install
+    - name: Build Conduit
+      run: |
+        echo "**** Building Conduit"
+        cmake --build build -j4 --config Debug
+    - name: Run Conduit Unit Tests
+      run: |
+        echo "**** Conduit Unit Tests (asan)"
+        export ASAN_SYMBOLIZER_PATH=`which llvm-symbolizer`
+        export CWD=`pwd`
+        export LSAN_OPTIONS="suppressions=${CWD}/src/cmake/lsan.supp"
+        echo "ASAN_SYMBOLIZER_PATH=${ASAN_SYMBOLIZER_PATH}"
+        echo "LSAN_OPTIONS=${LSAN_OPTIONS}"
+        export CTEST_OUTPUT_ON_FAILURE=1
+        ctest --test-dir build
+    - name: Install Conduit
+      run: |
+        echo "**** Installing Conduit"
+        cmake --install build --config Debug
+    - name: Check Install
+      run: |
+        echo "**** Checking Conduit using-with-cmake example"
+        cd install/examples/conduit/using-with-cmake
+        cmake -S . -B build
+        cmake --build build --verbose -j4
+        ./build/conduit_example
+    # - name: Check Install (MPI)
+    #   run: |
+    #     echo "**** Checking Conduit using-with-cmake-mpi example"
+    #     export CC=/usr/bin/mpicc
+    #     export CXX=/usr/bin/mpicxx
+    #     cd install/examples/conduit/using-with-cmake-mpi
+    #     cmake -S . -B build
+    #     cmake --build build --verbose -j4
+    #     mpiexec -n 2 ./build/conduit_mpi_example

.github/workflows/windows.yml

@@ -73,9 +73,9 @@ jobs:
     strategy:
       matrix:
           python-version:
-          - '3.7'
           - '3.8'
           - '3.9'
+          - '3.10'
     steps:
     - uses: actions/setup-python@v2
       with: