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Feature/oo adaptivity#289

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drreynolds wants to merge 112 commits intodevelopLLNL/sundials:developfrom feature/oo-adaptivityLLNL/sundials:feature/oo-adaptivityCopy head branch name to clipboard

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Commits on Jun 9, 2023

• Initial definition of SUNControl and SUNHeuristics classes

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• Initial implementation of SUNControl and SUNHeuristics classes

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• Minor bugfixes

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• Added fixed-step SUNControl implementation

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• Minor updates

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Commits on Jun 12, 2023

• Implementd PID controller

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• Implemented PI controller

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• Added missing Reset function

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• Added missing Reset function

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• Implemented I controller

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• Implemented explicit Gustafsson controller

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• Updated handling of 'pq' for adaptivity controllers

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• Implemented implicit and imex Gustafsson controllers

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Commits on Jun 13, 2023

• Fixed return value of SUNControl 'SetParams' functions

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• Commenting update

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• Removed implementation-specific 'destroy' functions, since top-level routine is identical

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• Added missing 'return SUNCONTROL_SUCCESS' statements

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• Fixed minor error

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• Added thorough comments on SUNControl objects to main sundials_control.h header

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• Initial draft of SUNHeuristics class, with default implementation

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• Initial draft of 'unconstrained' SUNHeuristics implementation

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• bugfixes in SUNControl implementations

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Commits on Jun 14, 2023

• Initial integration of SUNControl and SUNHeuristics classes into ARKODE. Code builds, but still needs work/debugging.

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Commits on Jun 15, 2023

• Resoved build issues

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• Added missing return flag names

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• Adjusted things to remove 'hmin' and 'hmax_inv' from ARKODE main memory structure

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• Removed 'fixed' SUNControl implementation, since fixed-step modes can use default SUNControl implementation.

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• Minor fix

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Commits on Jun 16, 2023

• Added missing update to ark_mem->eta.

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• Moved safety factor from SUNControl to SUNHeuristics

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• Added heuristics routine to enforce min/max bounds on first step; added missing call to SUNHeuristicsUpdate upon time step completion in ARKODE

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• Removed hmin,hmax compatibility checks from SUNHeuristicsSetMaxStep_Default and SUNHeuristicsSetMinStep_Default, since these prohibit convergence tests that adjust fixed-step sizes.

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• Fixed potential seg-fault if user calls *SetAdaptivityMethod with adapt_params==NULL

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• Fixed typo

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• Increased maximum CFL step size factor to ensure that it exceeds etamx1

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• Fixed typos in Gustafsson controllers

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  ca7cfe8

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• Minor cleanup

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• Added missing update for previous step size

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• Improved SUNControlWrite output

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• Improved SUNHeuristicsWrite output

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• Removed unused SUNHeuristicsFreeEmpty routine

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• Added documentation on generic SUNControl and SUNHeuristics classes; minor cleanup to header files

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Commits on Jun 18, 2023

• Initial draft of SUNControl and SUNHeuristics documentation

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• Updated ARKODE documentation to note new SetController and SetHeuristics routines, and to note newly-deprecated routines

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• Added missing #includes

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Commits on Jun 19, 2023

• Updated ARKODE examples that customize either heuristic or time step controllers to use new interfaces (all EXCEPT F2003_serial/ark_analytic_f2003.f90, since need to SWIG-ify the new modules).

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• Generated F2003 interfaces for SUNControl and SUNHeuristics modules; moved declaration of ARKUserStabilityData, ARKUserStability, ARKUserStability_Free and ARKControlExpStab to arkode_impl.h instea…

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• Updated swig and CMake files to enable F2003 examples to use new SUNControl and SUNHeuristics modules; regenerated swig interfaces

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• Converged ark_analytic_f2003.f90 example to use new SUNControl API

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• Merged changes in from develop

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Commits on Jun 20, 2023

• Update Fortran.rst

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Commits on Jun 21, 2023

• Added SUNControl and SUNHeuristics documentation to the superbuild. Updated documentation style for function inputs/returns

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• Multiple minor fixes; updated ARKODE paper citation

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Commits on Jul 5, 2023

• Added 'dsm' (fast error estimate) to MRI controller definitions

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• Added 'Update' routines for controllers of type SUNDIALS_CONTROL_MRI_H and SUNDIALS_CONTROL_MRI_TOL

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• Regenerated SWIG interfaces

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Commits on Sep 13, 2023

• Merge branch 'develop' into feature/oo-adaptivity

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• post merge fix

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• remove erroneous deprecation in docs

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• change dpreceated version to x.x.x

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• remvoe note, add versionadded

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• line wrap new doc files

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• Merge branch 'develop' into feature/oo-adaptivity

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Commits on Sep 14, 2023

• add caliper as needed to object libs

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• Merge remote-tracking branch 'origin/develop' into feature/oo-adaptivity

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Commits on Sep 15, 2023

• Fixed broken reference to ark_mem->hmin due to recent merge from develop

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• Fixed build issues (I'm guessing that this arose in a recent pull from develop?)

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• Documentation updates to clarify correct usage of deprecated routines

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• Renamed SUNControl_ID to SUNControl_Type

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• Added underscore between <class name> and <method> for generic methods

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• Regenerated F2003 interfaces

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• Update doc/shared/suncontrol/SUNControl_Description.rst

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• Merge branch 'feature/oo-adaptivity' of github.com:LLNL/sundials into feature/oo-adaptivity

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• Added integer return value to SUNControl_Destroy and SUNHeuristics_Destroy

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Commits on Sep 20, 2023

• Fixed missing return values from non-void SUNControl_Destroy and SUNHeuristics_Destroy routines

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• Fixed merge errors

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• Renamed SUNControl to SUNAdaptController

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• Renamed SUNHeuristics to SUNTimestepHeuristics

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• Implemented some of the changes requested in PR review

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• updated underscoring in SUNAdaptController implementations

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• updated underscoring in SUNTimestepHeuristics implementations

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• Reverted ark_heat1D_adapt.c to continue using ARKStepSetAdaptivityMethod for error testing

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• Removed default constructors for generic SUNAdaptController and SUNTimestepHeuristics objects

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• Update src/arkode/arkode_io.c

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• Added changes requested in PR review

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• Merge branch 'feature/oo-adaptivity' of github.com:LLNL/sundials into feature/oo-adaptivity

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• Fixed underscoring in documentation for SUNAdaptController and SUNTimestepHeuristics implementations

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Commits on Sep 21, 2023

• Change the default 4th order ERK and DIRK methods to improve quality of embedding

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• Reorder so the default method is first

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• Added ownership flags for SUNTimestepHeuristics and SUNAdaptController objects within ARKODE

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• Added changes requested in PR review

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• Regenerated SWIG interfaces

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• Updated shared tarscript

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• Fixed fmod/CMakeLists.txt to reference renamed controller/heuristics modules

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• Fixed suncontrol->sunadaptcontroller and sunheuristics->suntimestepheuristics name change issues in various F2003 interface files

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• Set default 4th order ERK

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• Fixed a few missing sunheuristics->suntimestepheuristics changes

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• Re-inserted leading underscores for hidden SUNTimestepAdaptivity and SUNAdaptController structures

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• regeneraged F2003 interfaces

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Commits on Sep 22, 2023

• Updated realtype -> sunrealtype in SUNAdaptController and SUNTimestepHeuristics. Adjusted SUNAdaptController API according to PR discussion.

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• Regenerated F2003 interfaces

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• Fixed typo

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• update .out files

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• update Fortran .out files

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Commits on Sep 23, 2023

• Add Sofroniou-Spaletta-ERK documentation

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Commits on Sep 27, 2023

• Update changelog

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Commits on Sep 30, 2023

• Merged upstream changes from develop

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Commits on Oct 2, 2023

• Fixed bug in backwards time integration

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Commits on Oct 4, 2023

• Fixed newly-introduced bug -- added default order adjustment of -1, but had forgotten to add 1 to the embedding order

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• Merge develop

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Commits on Oct 5, 2023

• Merge feature/default_order_4_ark into feature/oo-adaptivity

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Commits on Oct 16, 2023

• move API descriptions to first section

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