Code

Development#244

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mschwoer merged 32 commits intomainMannLabs/alphabase:mainfrom developmentMannLabs/alphabase:developmentCopy head branch name to clipboardNov 19, 2024

+552-188

Commits

Commits on Nov 12, 2024

• add integration tests for psm readers

  mschwoer

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  4c779a8

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• add test data

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• add a TODO

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• add check_exact option

  mschwoer

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• run unit & integration tests first for faster feedback

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• make the column order deterministic

  mschwoer

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• make some methods private

  mschwoer

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• make some variables private

  mschwoer

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  d7ab5af

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• access _psm_df rather than psm_df

  mschwoer

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  22f17d9

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• simplify modification_mapping

  mschwoer

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  a9c2d46

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• introduce PsmDfCols

  mschwoer

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  98a2f83

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• more use of PsmDfCols

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  a4103b0

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• more use of PsmDfCols

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Commits on Nov 13, 2024

• more use of PsmDfCols

  mschwoer

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  297aef0

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• more use of PsmDfCols

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  b760d50

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• add LibPsmDfCols

  mschwoer

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  41874d9

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• fix tests

  mschwoer

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Commits on Nov 14, 2024

• more use of PsmDfCols

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Commits on Nov 15, 2024

• Merge pull request #231 from MannLabs/add_psm_reader_tests

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• Merge branch 'development' into refactor_readers_I

  mschwoer

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  97613f1

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• add again what was lost by the failed merge commit 97613f1

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Commits on Nov 18, 2024

• Merge pull request #232 from MannLabs/refactor_readers_I

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  mschwoer

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• fix wrong modification mapping introduced in cdb1ddf

  mschwoer

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  47d77dd

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• revert changes to test data done in cdb1ddf

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  a2a6eb8

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• revert changes to test data done in cdb1ddf

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Commits on Nov 19, 2024

• Merge pull request #241 from MannLabs/fix_modifications_bug

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• Bump version: 1.4.1 → 1.4.2

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• Merge pull request #243 from MannLabs/bump_to_1.4.2

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• fix test on windows

  mschwoer

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  89b39bd

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• fix identation in MAxQuantReader._load_file

  mschwoer

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  46ef459

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• fix test on windows

  mschwoer

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  274f7d4

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• Merge pull request #245 from MannLabs/fix_identation

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