Update versions for github actions

NBISweden · Nov 19, 2024 · c882406 · c882406
1 parent 82e6149
commit c882406
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Showing 5 changed files with 15 additions and 20 deletions.
diff --git a/.github/workflows/gerp.yaml b/.github/workflows/gerp.yaml
@@ -31,15 +31,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: eWaterCycle/setup-apptainer@v2
         with:
-          apptainer-version: 1.1.4
+          apptainer-version: 1.3.5
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           channels: conda-forge,bioconda
           activate-environment: generode
           environment-file: environment.yml

diff --git a/.github/workflows/mitogenome_mapping.yaml b/.github/workflows/mitogenome_mapping.yaml
@@ -55,15 +55,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: eWaterCycle/setup-apptainer@v2
         with:
-          apptainer-version: 1.1.4
+          apptainer-version: 1.3.5
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           channels: conda-forge,bioconda
           activate-environment: generode
           environment-file: environment.yml

diff --git a/.github/workflows/mlRho_options.yaml b/.github/workflows/mlRho_options.yaml
@@ -37,15 +37,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: eWaterCycle/setup-apptainer@v2
         with:
-          apptainer-version: 1.1.4
+          apptainer-version: 1.3.5
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           channels: conda-forge,bioconda
           activate-environment: generode
           environment-file: environment.yml

diff --git a/.github/workflows/pca_roh.yaml b/.github/workflows/pca_roh.yaml
@@ -29,15 +29,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: eWaterCycle/setup-apptainer@v2
         with:
-          apptainer-version: 1.1.4
+          apptainer-version: 1.3.5
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           channels: conda-forge,bioconda
           activate-environment: generode
           environment-file: environment.yml

diff --git a/.github/workflows/snpeff.yaml b/.github/workflows/snpeff.yaml
@@ -31,15 +31,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: eWaterCycle/setup-apptainer@v2
         with:
-          apptainer-version: 1.1.4
+          apptainer-version: 1.3.5
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           channels: conda-forge,bioconda
           activate-environment: generode
           environment-file: environment.yml