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Revert "Update mounted path to reflect actual dirs in Snakefile"
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This reverts commit 2f65a00.
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johnne committed Apr 28, 2023
1 parent 2f65a00 commit 478e027
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4 changes: 2 additions & 2 deletions pages/containers/containers-4-managing-containers.md
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Expand Up @@ -68,11 +68,11 @@ directory on your host system.
Say that we are interested in getting the resulting html reports from FastQC in
our container. We can do this by mounting a directory called, say,
`fastqc_results` in your current directory to the `/course/results/`
`fastqc_results` in your current directory to the `/course/results/fastqc`
directory in the container. Try this out by running:

```bash
docker run --rm -v $(pwd)/fastqc_results:/course/results/ my_docker_conda
docker run --rm -v $(pwd)/fastqc_results:/course/results/fastqc my_docker_conda
```

Here the `-v` flag to docker run specifies the bind mount in the form of
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