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--- | ||
title: Course Certificate | ||
subtitle: Tools for Reproducible Research | ||
format: | ||
pdf: | ||
theme: flatly | ||
mainfont: Arial | ||
fontsize: 11pt | ||
number-sections: false | ||
fig-align: center | ||
papersize: a4 | ||
params: | ||
location: '' | ||
participant: '' | ||
month_start: '' | ||
day_start: '' | ||
month_end: '' | ||
day_end: '' | ||
year: '' | ||
engine: knitr | ||
--- | ||
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![NBIS logo](images/nbislogo_green_txt_f34bc9d3c3.png){height=50} | ||
\hspace{4em} | ||
![SciLifeLab logo](images/SciLifeLab_Logotype_Green_POS.png){height=50} | ||
\hspace{4em} | ||
![Elixir logo](images/elixir_sweden_white_background.png){height=50} | ||
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This is to certify that **`r params$participant`** has successfully taken part in the NBIS/ELIXIR course | ||
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**Tools for Reproducible Research** | ||
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The course was held `r params$location`, `r params$month_start` `r params$day_start` - `r params$month_end` `r params$day_end` `r params$year`. It consisted of lectures, computer exercises and group discussions. | ||
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The following subjects and fields were covered: | ||
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- Use good practices for data analysis and management | ||
- Clearly organise their bioinformatic projects | ||
- Use the version control system Git to track and collaborate on code | ||
- Use the package and environment manager Conda | ||
- Use and develop workflows with Snakemake and Nextflow | ||
- Use Quarto and Jupyter Notebooks to document and generate automated reports | ||
- Use Docker and Singularity/Apptainer to distribute containerized computational environments | ||
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**Examination**: Presence during all the lectures and computer/practical exercises. | ||
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The course was arranged by the National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory (SciLifeLab) and ELIXIR-Europe. | ||
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\-\-\-\ | ||
*Stockholm, `r params$month_end` `r params$day_end`, `r params$year`* | ||
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*Erik Fasterius & John Sundh*\ | ||
*Dept of Biochemistry and Biophysics*\ | ||
*NBIS, Science for Life Laboratory, Stockholm University*\ | ||
*Course examiners* |
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