Merge branch 'ufs-community:develop' into develop #20
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| name: debug-docs-test_coverage | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash -exo pipefail {0} | |
| jobs: | |
| debug-build-and-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: install-dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libmpich-dev | |
| sudo apt-get install doxygen | |
| sudo apt-get install libpng-dev | |
| sudo apt-get install libjpeg-dev | |
| sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config | |
| python3 -m pip install gcovr | |
| - name: cache-esmf | |
| id: cache-esmf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/esmf | |
| key: esmf-8.2.0-${{ runner.os }}3 | |
| - name: build-esmf | |
| if: steps.cache-esmf.outputs.cache-hit != 'true' | |
| run: | | |
| pushd ~ | |
| export ESMF_DIR=~/esmf-ESMF_8_2_0 | |
| wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null | |
| tar zxf ESMF_8_2_0.tar.gz | |
| cd esmf-ESMF_8_2_0 | |
| export ESMF_COMM=mpich3 | |
| export ESMF_INSTALL_BINDIR=bin | |
| export ESMF_INSTALL_LIBDIR=lib | |
| export ESMF_INSTALL_MODDIR=mod | |
| export ESMF_COMPILER=gfortran | |
| export ESMF_INSTALL_PREFIX=~/esmf | |
| export ESMF_NETCDF=split | |
| export ESMF_NETCDF_INCLUDE=/usr/include | |
| export ESMF_NETCDF_LIBPATH=/usr/x86_64-linux-gnu | |
| make -j2 | |
| make install | |
| - name: cache-jasper | |
| id: cache-jasper | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/jasper | |
| key: jasper-2.0.25-${{ runner.os }}3 | |
| - name: build-jasper | |
| if: steps.cache-jasper.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://github.com/jasper-software/jasper/archive/version-2.0.25.tar.gz &> /dev/null | |
| tar zxf version-2.0.25.tar.gz | |
| cd jasper-version-2.0.25 | |
| mkdir build-jasper && cd build-jasper | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper -DJAS_ENABLE_SHARED=OFF | |
| make -j2 | |
| make install | |
| - name: cache-nceplibs | |
| id: cache-nceplibs | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/nceplibs | |
| key: nceplibs-1.4.0-${{ runner.os }}3 | |
| - name: build-nceplibs | |
| if: steps.cache-nceplibs.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://github.com/NOAA-EMC/NCEPLIBS/archive/v1.4.0.tar.gz &> /dev/null | |
| tar zxf v1.4.0.tar.gz | |
| cd NCEPLIBS-1.4.0 | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON | |
| make -j2 | |
| - name: checkout-ufs-utils | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ufs_utils | |
| submodules: recursive | |
| - name: build | |
| run: | | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| cd ufs_utils | |
| mkdir build && cd build | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| export FC=mpifort | |
| export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64" | |
| cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs' -DCMAKE_BUILD_TYPE=Debug -DENABLE_DOCS=On -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0" | |
| make -j2 | |
| - name: test | |
| run: | | |
| cd ufs_utils/build | |
| export LSAN_OPTIONS=suppressions=LSanSuppress.supp | |
| ctest --rerun-failed --output-on-failure | |
| export PATH="/home/runner/.local/bin:$PATH" | |
| gcovr -r .. --html-details -o test-coverage.html | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: test-coverage | |
| path: ufs_utils/build/*.html |