Geübt Charak

Characterisation module of the Geübt application.

Geübt Validate

Data validation module of the Geübt application.

Usage

Test with default snakemake config. Needs a mongoDB and API instance running.

Meant to be deployed through geuebt-core.

For data model and validation, see API doc.

Important note

In case of an error with abricate not finding perl dependencies, run mamba update --all this should fix it waiting for a better solution