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v2.0.0 'Victoria'
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@pcrxn pcrxn released this 24 May 15:43
· 14 commits to main since this release
2.0.0
9819c7c

This release of BaitCapture improves greatly upon v1.0.0, with several added features including:

  • Custom alignment and summary statistics report tables, which are outputted to a summary/ directory
  • Ability to define thresholds for target detection on the command-line
  • Ability to provide a target metadata file on the command-line for cluster-level detection
  • Option to report all undetected targets in outputs
  • KMA as a new (and default) aligner
  • fastp for adapter removal and read trimming
  • Mosdepth for a nice overview of read alignments in the MultiQC report
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