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Merge remote-tracking branch 'origin/celltype_annotation_automl' into…
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… celltype_annotation_automl
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@xingzhongyu
xingzhongyu committed Jan 7, 2025
2 parents 6b6f79b + 135136c commit ee334bb
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26 changes: 13 additions & 13 deletions examples/atlas/sweep_results/Blood_ans.csv
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18 changes: 9 additions & 9 deletions examples/atlas/sweep_results/Brain_ans.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -386,7 +386,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
config_dict:
feature_channel: feature.cell
label_channel: cell_type
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",0.35499998927116394,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/hpa8itbf|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/yxhw6hrg,https://wandb.ai/xzy11632/dance-dev/sweeps/ogwvhde7,https://wandb.ai/xzy11632/dance-dev/sweeps/1mzn11g0","- type: filter.gene
target: FilterGenesPlaceHolder
params: {}
- type: normalize
Expand Down Expand Up @@ -1432,7 +1432,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
config_dict:
feature_channel: feature.cell
label_channel: cell_type
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",0.31200000643730164,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/66gvcj96|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/dfkmrl1i,https://wandb.ai/xzy11632/dance-dev/sweeps/ciietvtw,https://wandb.ai/xzy11632/dance-dev/sweeps/f1mqyetb","- type: filter.gene
target: FilterGenesScanpyOrder
params:
order:
Expand Down Expand Up @@ -1497,7 +1497,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
config_dict:
feature_channel: feature.cell
label_channel: cell_type
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9372df2d-13d6-4fac-980b-919a5b7eb483,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/nmy20c1k|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/bf71t9iq,https://wandb.ai/xzy11632/dance-dev/sweeps/hj5g01na,https://wandb.ai/xzy11632/dance-dev/sweeps/6yqm4q5t","- type: filter.gene
target: FilterGenesPercentile
params: {}
Expand Down Expand Up @@ -1660,7 +1660,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
config_dict:
feature_channel: feature.cell
label_channel: cell_type
",0.4510000050067901,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/ol3ztzsp|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/4y8mkdbc,https://wandb.ai/xzy11632/dance-dev/sweeps/227yfu9d,https://wandb.ai/xzy11632/dance-dev/sweeps/p7ic9i6t","- type: filter.gene
",0.45100000500679016,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/ol3ztzsp|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/4y8mkdbc,https://wandb.ai/xzy11632/dance-dev/sweeps/227yfu9d,https://wandb.ai/xzy11632/dance-dev/sweeps/p7ic9i6t","- type: filter.gene
target: FilterGenesScanpyOrder
params:
order:
Expand Down Expand Up @@ -2038,7 +2038,7 @@ e8681d74-ac9e-4be5-be14-1cf1bbd54dd7,"step2:https://wandb.ai/xzy11632/dance-dev/
config_dict:
feature_channel: feature.cell
label_channel: cell_type
",0.4550000131130218,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/9ulcm4zs|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/lc65vlu9,https://wandb.ai/xzy11632/dance-dev/sweeps/102sw7wh,https://wandb.ai/xzy11632/dance-dev/sweeps/xg2gclj5","- type: filter.gene
",0.45500001311302185,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/9ulcm4zs|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/lc65vlu9,https://wandb.ai/xzy11632/dance-dev/sweeps/102sw7wh,https://wandb.ai/xzy11632/dance-dev/sweeps/xg2gclj5","- type: filter.gene
target: FilterGenesScanpyOrder
params:
order:
Expand Down Expand Up @@ -2091,7 +2091,7 @@ e8681d74-ac9e-4be5-be14-1cf1bbd54dd7,"step2:https://wandb.ai/xzy11632/dance-dev/
config_dict:
feature_channel: feature.cell
label_channel: cell_type
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93cb76aa-a84b-4a92-8e6c-66a914e26d4c,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/aqfmsmpx|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/sxj7ndgn,https://wandb.ai/xzy11632/dance-dev/sweeps/kf6pxhij,https://wandb.ai/xzy11632/dance-dev/sweeps/kfpas6cb","- type: filter.gene
target: FilterGenesPlaceHolder
params: {}
Expand Down Expand Up @@ -2784,7 +2784,7 @@ f64e1be1-de15-4d27-8da4-82225cd4c035,"step2:https://wandb.ai/xzy11632/dance-dev/
config_dict:
feature_channel: feature.cell
label_channel: cell_type
",0.4739454090595245,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/zzzd70pb|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/h6iokqel,https://wandb.ai/xzy11632/dance-dev/sweeps/8tcdt2ii,https://wandb.ai/xzy11632/dance-dev/sweeps/g7s2t70w","- type: filter.gene
",0.47394540905952454,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/zzzd70pb|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/h6iokqel,https://wandb.ai/xzy11632/dance-dev/sweeps/8tcdt2ii,https://wandb.ai/xzy11632/dance-dev/sweeps/g7s2t70w","- type: filter.gene
target: FilterGenesPlaceHolder
params: {}
- type: normalize
Expand Down Expand Up @@ -2878,7 +2878,7 @@ ed11cc3e-2947-407c-883c-c53b043917c3,"step2:https://wandb.ai/xzy11632/dance-dev/
config_dict:
feature_channel: feature.cell
label_channel: cell_type
",0.468804657459259,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/d2u4p3ti|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/5tarnk33,https://wandb.ai/xzy11632/dance-dev/sweeps/pyebz1b7,https://wandb.ai/xzy11632/dance-dev/sweeps/vtfdyrpk","- type: filter.gene
",0.46880465745925903,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/d2u4p3ti|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/5tarnk33,https://wandb.ai/xzy11632/dance-dev/sweeps/pyebz1b7,https://wandb.ai/xzy11632/dance-dev/sweeps/vtfdyrpk","- type: filter.gene
target: FilterGenesScanpyOrder
params:
order:
Expand Down Expand Up @@ -2979,7 +2979,7 @@ ed11cc3e-2947-407c-883c-c53b043917c3,"step2:https://wandb.ai/xzy11632/dance-dev/
config_dict:
feature_channel: feature.cell
label_channel: cell_type
",0.3235000073909759,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o748tsyg|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/py2yh3r8,https://wandb.ai/xzy11632/dance-dev/sweeps/cdz2iob0,https://wandb.ai/xzy11632/dance-dev/sweeps/ax6j7ylt","- type: filter.gene
",0.32350000739097595,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o748tsyg|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/py2yh3r8,https://wandb.ai/xzy11632/dance-dev/sweeps/cdz2iob0,https://wandb.ai/xzy11632/dance-dev/sweeps/ax6j7ylt","- type: filter.gene
target: FilterGenesPercentile
params: {}
- type: normalize
Expand Down
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