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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| .github | ||
| .vscode | ||
| binder | ||
| examples | ||
| docs | ||
| tests |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,17 +2,21 @@ name: PyTest | |
|
|
||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: | ||
| - main | ||
|
|
||
| jobs: | ||
| get_dockerfiles: | ||
| name: Get list of dockerfiles for different containers | ||
| name: Get List of Dockerfiles for Containers | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| packages: read | ||
| outputs: | ||
| imagenames: ${{ steps.set-matrix.outputs.imagenames }} | ||
| steps: | ||
| - id: set-matrix | ||
| - name: Retrieve Docker Image Names | ||
| id: set-matrix | ||
| env: | ||
| GH_TOKEN: ${{ secrets.GHCR_TOKEN }} | ||
| run: | | ||
|
|
@@ -35,57 +39,56 @@ jobs: | |
| echo "image names with tag latest: $imagenames_latest" | ||
| echo "imagenames=$imagenames_latest" >> $GITHUB_OUTPUT | ||
| - name: Dockerfile overview | ||
| - name: Dockerfile Overview | ||
| run: | | ||
| echo "final list of images with tag latest: ${{ steps.set-matrix.outputs.imagenames }}" | ||
| echo "Final list of images with tag latest: ${{ steps.set-matrix.outputs.imagenames }}" | ||
| test: | ||
| name: Run tests and get coverage report | ||
| name: Run Tests and Coverage Report | ||
| needs: get_dockerfiles | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| pull-requests: write | ||
| contents: write | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| imagename: ${{ fromJson(needs.get_dockerfiles.outputs.imagenames) }} | ||
| # runs within Docker container | ||
| container: | ||
| image: ghcr.io/ptb-mr/${{ matrix.imagename }}:latest | ||
| options: --user runner | ||
|
|
||
| steps: | ||
| - name: Checkout repo | ||
| - name: Checkout Repository | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Install mrpro and dependencies | ||
| run: pip install --upgrade --upgrade-strategy "eager" .[test] | ||
| - name: Install MRpro and Dependencies | ||
| run: pip install --upgrade --upgrade-strategy eager .[test] | ||
|
|
||
| - name: Install pytest-github-actions-annotate-failures plugin | ||
| - name: Install PyTest GitHub Annotation Plugin | ||
| run: pip install pytest-github-actions-annotate-failures | ||
|
|
||
| - name: Run PyTest | ||
| - name: Run PyTest and Generate Coverage Report | ||
| run: | | ||
| pytest -n 4 -m "not cuda" --junitxml=pytest.xml --cov-report=term-missing:skip-covered --cov=mrpro | tee pytest-coverage.txt | ||
| pytest -n 4 -m "not cuda" --junitxml=pytest.xml \ | ||
| --cov-report=term-missing:skip-covered --cov=mrpro | tee pytest-coverage.txt | ||
| - name: Check for pytest.xml | ||
| - name: Verify PyTest XML Output | ||
| run: | | ||
| if [ -f pytest.xml ]; then | ||
| echo "pytest.xml file found. Continuing..." | ||
| else | ||
| echo "pytest.xml file not found. Please check previous 'Run PyTest' section for errors." | ||
| if [ ! -f pytest.xml ]; then | ||
| echo "PyTest XML report not found. Please check the previous 'Run PyTest' step for errors." | ||
| exit 1 | ||
| fi | ||
| - name: Pytest coverage comment | ||
| - name: Post PyTest Coverage Comment | ||
| id: coverageComment | ||
| uses: MishaKav/[email protected] | ||
| with: | ||
| pytest-coverage-path: ./pytest-coverage.txt | ||
| junitxml-path: ./pytest.xml | ||
|
|
||
| - name: Create the Badge | ||
| - name: Create Coverage Badge on Main Branch Push | ||
| uses: schneegans/[email protected] | ||
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | ||
| with: | ||
| auth: ${{ secrets.GIST_SECRET }} | ||
| gistID: 48e334a10caf60e6708d7c712e56d241 | ||
|
|
@@ -95,12 +98,12 @@ jobs: | |
| color: ${{ steps.coverageComment.outputs.color }} | ||
| namedLogo: python | ||
|
|
||
| - name: Set pipeline status | ||
| - name: Set Pipeline Status Based on Test Results | ||
| if: steps.coverageComment.outputs.errors != 0 || steps.coverageComment.outputs.failures != 0 | ||
| uses: actions/github-script@v7 | ||
| with: | ||
| script: | | ||
| core.setFailed('PyTest workflow failed with ${{ steps.coverageComment.outputs.errors }} errors and ${{ steps.coverageComment.outputs.failures }} failures.') | ||
| core.setFailed("PyTest workflow failed with ${{ steps.coverageComment.outputs.errors }} errors and ${{ steps.coverageComment.outputs.failures }} failures.") | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | ||
|
|
||
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