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Release v0.250107 #599

Merged
merged 1 commit into from
Jan 7, 2025
Merged

Release v0.250107 #599

merged 1 commit into from
Jan 7, 2025

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fzimmermann89
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@fzimmermann89 fzimmermann89 commented Jan 7, 2025 •
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Some of the highlights:

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github-actions bot commented Jan 7, 2025 •
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Coverage

Coverage Report
FileStmtsMissCoverMissing
src/mrpro/algorithms/csm
   inati.py24196%44
   walsh.py16194%34
src/mrpro/algorithms/dcf
   dcf_voronoi.py53492%15, 48–49, 76
src/mrpro/algorithms/optimizers
   adam.py20195%69
src/mrpro/algorithms/reconstruction
   DirectReconstruction.py281643%51–71, 85
   IterativeSENSEReconstruction.py13192%76
   Reconstruction.py502256%42, 54–56, 80–87, 104–113
   RegularizedIterativeSENSEReconstruction.py411759%96–100, 114–139
src/mrpro/data
   AcqInfo.py128398%26, 169, 207
   CsmData.py29390%15, 82–84
   DcfData.py45882%18, 66, 78–83
   IData.py67987%119, 125, 129, 159–167
   IHeader.py75791%75, 109, 127–131
   KData.py2142588%111–112, 127, 134, 144, 152, 206–207, 245, 250–251, 270–281, 435, 437, 500, 515, 552, 583, 592
   KHeader.py1531789%25, 119–123, 150, 199, 210, 217–218, 221, 228, 260–271
   KNoise.py311552%39–52, 56–61
   KTrajectory.py811285%108–113, 116–118, 203–207
   MoveDataMixin.py1401887%15, 113, 129, 143–145, 207, 323–325, 338, 417, 437–438, 440, 455–456, 458
   QData.py39782%42, 65–73
   Rotation.py6743595%100, 198, 335, 433, 477, 495, 581, 583, 592, 626, 628, 691, 768, 773, 776, 791, 808, 813, 889, 1077, 1082, 1085, 1109, 1113, 1240, 1242, 1250–1251, 1315, 1397, 1690, 1846, 1881, 1885, 1996
   SpatialDimension.py2322191%34, 104, 141, 148, 154, 274–276, 289–291, 325, 343, 356, 369, 382, 395, 404–405, 420, 429
   acq_filters.py12192%47
src/mrpro/data/traj_calculators
   KTrajectoryCalculator.py25292%23, 45
   KTrajectoryIsmrmrd.py13285%41, 50
   KTrajectoryPulseq.py23196%55
src/mrpro/operators
   CartesianSamplingOp.py89397%118, 157, 280
   ConstraintsOp.py60297%46, 48
   EndomorphOperator.py65297%228, 234
   FiniteDifferenceOp.py27293%40, 105
   FourierOp.py158398%263, 381, 386
   Functional.py71593%20–22, 117, 119
   GridSamplingOp.py136993%72–73, 82–83, 90–91, 94, 96, 98
   LinearOperator.py1681094%55, 91, 190, 220, 261, 270, 278, 287, 295, 320
   LinearOperatorMatrix.py1581690%82, 119, 152, 161, 166, 175–178, 191–194, 203, 215, 304, 331, 359
   MultiIdentityOp.py13285%43, 48
   Operator.py78297%25, 74
   ProximableFunctionalSeparableSum.py39392%50, 103, 110
   SliceProjectionOp.py173895%44, 61, 63, 69, 206, 227, 260, 300
   WaveletOp.py120596%152, 170, 205, 210, 233
   ZeroPadOp.py16194%30
src/mrpro/utils
   filters.py62297%44, 49
   reshape.py60198%191
   slice_profiles.py46687%20, 36, 113–116, 149
   sliding_window.py34197%34
   split_idx.py10280%43, 47
   summarize_tensorvalues.py11918%20–29
   typing.py181139%8–23
   zero_pad_or_crop.py31681%26, 30, 54, 57, 60, 63
TOTAL489136093% 

Tests Skipped Failures Errors Time
2263 0 💤 0 ❌ 0 🔥 1m 9s ⏱️

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📚 Documentation

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schuenke
schuenke approved these changes Jan 7, 2025
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@fzimmermann89 fzimmermann89 enabled auto-merge (squash) January 7, 2025 23:05
@fzimmermann89 fzimmermann89 merged commit f040c00 into main Jan 7, 2025
23 checks passed
@fzimmermann89 fzimmermann89 deleted the v0.250107 branch January 7, 2025 23:07
fzimmermann89 added a commit that referenced this pull request Jan 10, 2025
@fzimmermann89
Squashed commit of the following:
a72d095 
commit 36785c4
Author: lrlunin <[email protected]>
Date:   Fri Jan 10 13:57:38 2025 +0100

    move cartesion_reconstruction in correct folders

commit d3b0d1b
Author: lrlunin <[email protected]>
Date:   Fri Jan 10 13:54:34 2025 +0100

    run mypy hook as last

commit b66b9b7
Author: Lunin Leonid <[email protected]>
Date:   Thu Jan 9 22:22:38 2025 +0100

    fix notebook_path variable in matrix

commit 8e2cb8e
Merge: f450529 a1873a0
Author: Lunin Leonid <[email protected]>
Date:   Thu Jan 9 22:20:50 2025 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit f450529
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Jan 9 22:15:20 2025 +0100

    changes to leonids pr (#602)

commit a1873a0
Author: Lunin Leonid <[email protected]>
Date:   Wed Jan 8 09:54:12 2025 +0100

    Add dark and light logo to README (#600)

commit f040c00
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Jan 8 00:07:27 2025 +0100

    Release v0.250107 (#599)

commit 13c4e7e
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 16:24:36 2024 +0100

    fix notebooks_path output

commit 93ef986
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 16:21:23 2024 +0100

    fix matrix element name

commit 7eccf87
Merge: 2d3c3ff 9dc1167
Author: Lunin Leonid <[email protected]>
Date:   Wed Dec 18 16:14:30 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit 2d3c3ff
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:46:10 2024 +0100

    remove space after markdown for colab badge

commit 9a5556d
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:45:25 2024 +0100

    add space after markdown for colab badge

commit fba5a6f
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:05:55 2024 +0100

    add colab badge for each notebook

commit 159afed
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 14:17:45 2024 +0100

    update jupytext version

commit 34d43f0
Author: lrlunin <[email protected]>
Date:   Tue Dec 10 13:58:43 2024 +0100

    use find for notebook listing in docs

commit f76b236
Author: lrlunin <[email protected]>
Date:   Tue Dec 10 13:23:29 2024 +0100

    one-way conversion from .py to .ipynb, remove preamble from .py representation

commit 865347a
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:45:42 2024 +0100

    fixed path for notebooks in examples

commit 1688c70
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:44:16 2024 +0100

    fixed trigger for jupytext

commit b9b3a6f
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:40:17 2024 +0100

    split scripts and notebooks

commit 279a578
Merge: beddf13 8d24ebb
Author: Lunin Leonid <[email protected]>
Date:   Tue Nov 19 21:10:30 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit beddf13
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 21:10:03 2024 +0100

    sync .ipynb/.py in pre-commit, add preamble in .py files

commit 0600a53
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 18:42:47 2024 +0100

    moved examples ruff config to examples folder, removed verbose from pre-commit hook

commit 36f3b7a
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 18:25:57 2024 +0100

    fixed missing kernelspec

commit 4d610c6
Author: lrlunin <[email protected]>
Date:   Fri Nov 15 14:23:38 2024 +0100

    also removing metadata.language_info

commit 48e8080
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 22:45:35 2024 +0100

    clean kernel related information from the cells

commit f8aa621
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 20:44:13 2024 +0100

    remove mention of convert steps

commit 534aaa0
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 20:37:43 2024 +0100

    reset cell id

commit 9f5f2da
Merge: 74675d6 38722bf
Author: Lunin Leonid <[email protected]>
Date:   Thu Nov 14 20:36:21 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit 74675d6
Merge: ae3a613 c268ad2
Author: Lunin Leonid <[email protected]>
Date:   Sun Nov 10 20:50:44 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit ae3a613
Author: lrlunin <[email protected]>
Date:   Sun Nov 10 20:50:10 2024 +0100

    reset the cells to init states

commit 5d1dba2
Author: lrlunin <[email protected]>
Date:   Fri Nov 8 16:43:47 2024 +0100

    moved notebooks formatting and update to pre-commit
fzimmermann89 added a commit that referenced this pull request Jan 12, 2025
@fzimmermann89
Squashed commit of the following:
7cc6587 
commit 51d3dda
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 15:25:48 2025 +0100

    pip install mrpro with notebook option

commit feabab3
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 15:24:02 2025 +0100

    execute notebooks locally

commit 8a537d4
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 15:21:48 2025 +0100

    silence jupytext

commit 36785c4
Author: lrlunin <[email protected]>
Date:   Fri Jan 10 13:57:38 2025 +0100

    move cartesion_reconstruction in correct folders

commit d3b0d1b
Author: lrlunin <[email protected]>
Date:   Fri Jan 10 13:54:34 2025 +0100

    run mypy hook as last

commit b66b9b7
Author: Lunin Leonid <[email protected]>
Date:   Thu Jan 9 22:22:38 2025 +0100

    fix notebook_path variable in matrix

commit 8e2cb8e
Merge: f450529 a1873a0
Author: Lunin Leonid <[email protected]>
Date:   Thu Jan 9 22:20:50 2025 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit f450529
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Jan 9 22:15:20 2025 +0100

    changes to leonids pr (#602)

commit a1873a0
Author: Lunin Leonid <[email protected]>
Date:   Wed Jan 8 09:54:12 2025 +0100

    Add dark and light logo to README (#600)

commit f040c00
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Jan 8 00:07:27 2025 +0100

    Release v0.250107 (#599)

commit 13c4e7e
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 16:24:36 2024 +0100

    fix notebooks_path output

commit 93ef986
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 16:21:23 2024 +0100

    fix matrix element name

commit 7eccf87
Merge: 2d3c3ff 9dc1167
Author: Lunin Leonid <[email protected]>
Date:   Wed Dec 18 16:14:30 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit 2d3c3ff
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:46:10 2024 +0100

    remove space after markdown for colab badge

commit 9a5556d
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:45:25 2024 +0100

    add space after markdown for colab badge

commit fba5a6f
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 15:05:55 2024 +0100

    add colab badge for each notebook

commit 159afed
Author: lrlunin <[email protected]>
Date:   Wed Dec 18 14:17:45 2024 +0100

    update jupytext version

commit 34d43f0
Author: lrlunin <[email protected]>
Date:   Tue Dec 10 13:58:43 2024 +0100

    use find for notebook listing in docs

commit f76b236
Author: lrlunin <[email protected]>
Date:   Tue Dec 10 13:23:29 2024 +0100

    one-way conversion from .py to .ipynb, remove preamble from .py representation

commit 865347a
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:45:42 2024 +0100

    fixed path for notebooks in examples

commit 1688c70
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:44:16 2024 +0100

    fixed trigger for jupytext

commit b9b3a6f
Author: lrlunin <[email protected]>
Date:   Wed Nov 20 22:40:17 2024 +0100

    split scripts and notebooks

commit 279a578
Merge: beddf13 8d24ebb
Author: Lunin Leonid <[email protected]>
Date:   Tue Nov 19 21:10:30 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit beddf13
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 21:10:03 2024 +0100

    sync .ipynb/.py in pre-commit, add preamble in .py files

commit 0600a53
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 18:42:47 2024 +0100

    moved examples ruff config to examples folder, removed verbose from pre-commit hook

commit 36f3b7a
Author: lrlunin <[email protected]>
Date:   Tue Nov 19 18:25:57 2024 +0100

    fixed missing kernelspec

commit 4d610c6
Author: lrlunin <[email protected]>
Date:   Fri Nov 15 14:23:38 2024 +0100

    also removing metadata.language_info

commit 48e8080
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 22:45:35 2024 +0100

    clean kernel related information from the cells

commit f8aa621
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 20:44:13 2024 +0100

    remove mention of convert steps

commit 534aaa0
Author: lrlunin <[email protected]>
Date:   Thu Nov 14 20:37:43 2024 +0100

    reset cell id

commit 9f5f2da
Merge: 74675d6 38722bf
Author: Lunin Leonid <[email protected]>
Date:   Thu Nov 14 20:36:21 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit 74675d6
Merge: ae3a613 c268ad2
Author: Lunin Leonid <[email protected]>
Date:   Sun Nov 10 20:50:44 2024 +0100

    Merge branch 'main' into notebooks-in-pre-commit

commit ae3a613
Author: lrlunin <[email protected]>
Date:   Sun Nov 10 20:50:10 2024 +0100

    reset the cells to init states

commit 5d1dba2
Author: lrlunin <[email protected]>
Date:   Fri Nov 8 16:43:47 2024 +0100

    moved notebooks formatting and update to pre-commit
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