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[WIP] Add surface support#106

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pbarbarant merged 24 commits intomainParietal-INRIA/fmralign:mainfrom feat/surface-supportParietal-INRIA/fmralign:feat/surface-supportCopy head branch name to clipboardJan 14, 2025

+194-51

Commits

Commits on Nov 27, 2024

• Refactor _make_parcellation function for improved readability and add _concat_surf_imgs utility function

  

  Pierre-Louis Barbarant

  committed
  f9d1bd1

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• Enhance ParcellationMasker to support SurfaceImage and refactor _fit_masker method for clarity

  

  Pierre-Louis Barbarant

  committed
  1968f55

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• Add test for ParcellationMasker to handle surface images and improve existing test readability

  

  Pierre-Louis Barbarant

  committed
  8567664

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• Remove redundant main block from test_non_contiguous_labels function in test_utils.py

  

  Pierre-Louis Barbarant

  committed
  181fa35

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• Add functions to create sample mesh and surface images for testing (from nilearn)

  

  Pierre-Louis Barbarant

  committed
  8d25cc2

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Commits on Nov 28, 2024

• Refactor _make_parcellation function for improved readability and format code; remove unused _concat_surf_imgs function

  

  Pierre-Louis Barbarant

  committed
  6a5aa67

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• Refactor ParcellationMasker to use concatenate_surface_images function and improve code readability

  

  Pierre-Louis Barbarant

  committed
  9039031

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• Merge branch 'main' into feat/surface-support

  pbarbarant

  authored
  8b01f10

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Commits on Dec 19, 2024

• Merge branch 'main' into feat/surface-support

  pbarbarant

  authored
  0525114

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• Refactor label extraction in parcellation function to use masker.transform

  

  Pierre-Louis Barbarant

  committed
  acc297f

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• Format masker_type assignment for improved readability

  

  Pierre-Louis Barbarant

  committed
  8831be5

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• Enhance tests for ParcellationMasker to support multiple surface images and improve assertions

  

  Pierre-Louis Barbarant

  committed
  a4d1a36

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• Add test for surface alignment compatibility in PairwiseAlignment

  

  Pierre-Louis Barbarant

  committed
  aecec66

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• Support SurfaceImage type in ParcellationMasker for improved image handling

  

  Pierre-Louis Barbarant

  committed
  f3ae847

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• Add tests for SurfaceImage compatibility in PairwiseAlignment

  

  Pierre-Louis Barbarant

  committed
  298749e

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Commits on Dec 30, 2024

• Refactor surface image concatenation in ParcellationMasker to use surface.concat_imgs

  

  Pierre-Louis Barbarant

  committed
  37f02c0

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• Support SurfaceImage type in _make_parcellation for enhanced clustering handling

  

  Pierre-Louis Barbarant

  committed
  07c845b

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• Add tests for SurfaceImage compatibility in TemplateAlignment

  

  Pierre-Louis Barbarant

  committed
  83caf31

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• Update fmralign/tests/test_preprocessing.py

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  pbarbarant

  and

  bthirion

  authored
  9605ec4

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• Refactor ParcellationMasker tests to remove unnecessary variable assignments and improve readability

  

  Pierre-Louis Barbarant

  committed
  a1a89f1

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• Remove unused import of os in _utils.py to clean up code

  

  Pierre-Louis Barbarant

  committed
  958edf6

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• Revert to concatenate_surface_images

  

  Pierre-Louis Barbarant

  committed
  a37d23c

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• Refactor surface template test to validate transformation for both hemispheres

  

  Pierre-Louis Barbarant

  committed
  271ec71

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• Remove unused import of 'surface' from test_template_alignment.py to clean up code

  

  Pierre-Louis Barbarant

  committed
  c6a690f

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