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KeywanHP authored Nov 27, 2023
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* #778 Network view with too many genes for the current user role breaks the UI.

## API
* Gene table and Evidence table outputs now are pure JSON (cleaning and improving the "CSV inside JSON" old format). This makes improves the coding of API clients (#655).
* Gene table and Evidence table outputs now are pure JSON (cleaning and improving the "CSV inside JSON" old format). This improves the coding of API clients (#655).
* Gene table output now includes the graph distance between genes and their evidences (based on semantic motifs, #743).
* Deprecated API calls removed, `/dataSource` (#653), `/ksHost` (#792), /latestNetworkStats (#657).

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## Miscellanea
* Migration to Java 17, new Java features available to developers.
* Migration to recent versions of Tomcat and Jetty (used for building), with consequent migration
of old J2EE libraries (eg, `java.servlet` to Jakarta, #74f27f0)
* Migration to recent versions of Tomcat and Jetty (used for building), with consequent migration of old J2EE libraries (eg, `java.servlet` to Jakarta, #74f27f0)
* Neo4j mode migrated to Neo4 5.10.x
* Various dependencies upgrades.
* Various dependencies upgraded.
* Minor enhancements to demo/aratiny launching scripts and continuous integration scripts.
* Maven build, option to run aratiny in single-specie mode added (#a387ee9, #cf23443).
* Several new example queries added to better showcase updated user limits.
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