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21 Open 64 Closed
21 Open 64 Closed
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Issues list

Investigate using GENCODE as a source of transcripts
#90 opened Jan 14, 2025 by davmlaw
Accessing transcript data for genes from bacterial artificial chromosomes (BACs)
#89 opened Jan 9, 2025 by jarbesfeld
3
get_acs_for_protein_seq should return list not None
#88 opened Nov 26, 2024 by davmlaw
Make a proper release
#85 opened Aug 26, 2024 by davmlaw
FastaSeqFetcher improvements
#84 opened Aug 26, 2024 by davmlaw
JSON breaking schema changes
#78 opened Mar 12, 2024 by davmlaw
2
Document JSON.gz files, and Transcript format
#77 opened Mar 12, 2024 by davmlaw
CDS phase (offset for eg ribo slippage)
#76 opened Mar 8, 2024 by holtgrewe
5
Use Snakemake to build transcripts
#70 opened Feb 19, 2024 by davmlaw
8
Transcripts from NCBI/Ensembl API
#69 opened Jan 25, 2024 by davmlaw
Create VEP-compatible releases in CI
#63 opened Nov 8, 2023 by holtgrewe
1
Add tests to CI
#62 opened Nov 8, 2023 by holtgrewe
FastaSeqFetcher - investigate differences between refseq and fasta exon generated transcript
#55 opened Aug 23, 2023 by davmlaw
1
Diff coding coordinates from latest
#54 opened Aug 9, 2023 by davmlaw
Historical GRCh38 refseq
#51 opened Jul 13, 2023 by davmlaw
3
Provide python-attrs classes?
#37 opened Mar 10, 2023 by holtgrewe
1
Transcript aliases - HGVS using gene names (canonical transcripts) or LRG
#36 opened Mar 6, 2023 by davmlaw
2
Move up/down transcript versions from VariantGrid to cdot
#28 opened Nov 21, 2022 by davmlaw
cdot responsible for fixing bad HGVS, allow warnings etc
#27 opened Nov 21, 2022 by davmlaw
5
Add build patch version
#16 opened Jul 29, 2022 by davmlaw
1
Do some benchmarks
#5 opened Jan 19, 2022 by davmlaw
3
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