Use tomlkit to dump updated dependencies #762

Job	Run time
Run custom pre-commit hooks (3.7, ubuntu-latest)	27s
pytest (3.7, ubuntu-latest)	21s
Run custom pre-commit hooks (3.7, windows-latest)	1m 28s
pytest (3.7, windows-latest)	1m 21s
Run custom pre-commit hooks (3.12, ubuntu-latest)	26s
pytest (3.8, ubuntu-latest)	17s
Run custom pre-commit hooks (3.12, windows-latest)	1m 7s
pytest (3.8, windows-latest)	1m 6s
pytest (3.9, ubuntu-latest)	31s
pytest (3.9, windows-latest)	52s
pytest (3.10, ubuntu-latest)	20s
pytest (3.10, windows-latest)	57s
pytest (3.11, ubuntu-latest)	21s
pytest (3.11, windows-latest)	56s
pytest (3.12, ubuntu-latest)	29s
pytest (3.12, windows-latest)	1m 23s
pytest (3.13, ubuntu-latest)	31s
pytest (3.13, windows-latest)	1m 40s
pytest (3.14, ubuntu-latest)	38s
pytest (3.14, windows-latest)	1m 56s
Call reusable workflow / Build distribution package	10s
Call reusable workflow / Build Documentation	25s
Call reusable workflow / Run `pre-commit`	52s
Call reusable workflow / Run `pylint` & `safety`	23s
	18m 57s

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