Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixing enum str formatting and batch parsing of special cases #3

Merged
merged 3 commits into from
Dec 8, 2023

Conversation

bergsalex
Copy link
Collaborator

This PR is part of the G3-29 / G3-30 ticket effort and relates to rendering enumerations in a way that is compatible with the old Batch Upload Parser.

Copy link

github-actions bot commented Dec 8, 2023

Test Coverage Report

---------- coverage: platform linux, python 3.11.7-final-0 -----------
Name                                          Stmts   Miss  Cover
-----------------------------------------------------------------
src/geneweaver/core/__init__.py                   1      0   100%
src/geneweaver/core/config.py                     2      0   100%
src/geneweaver/core/config_class.py              10      0   100%
src/geneweaver/core/enum.py                     118      1    99%
src/geneweaver/core/exc.py                        4      0   100%
src/geneweaver/core/parse/__init__.py             0      0   100%
src/geneweaver/core/parse/batch.py              112      2    98%
src/geneweaver/core/parse/csv.py                 54      0   100%
src/geneweaver/core/parse/enum.py                 8      0   100%
src/geneweaver/core/parse/exceptions.py          21      0   100%
src/geneweaver/core/parse/numpy.py               45      0   100%
src/geneweaver/core/parse/score.py               41      0   100%
src/geneweaver/core/parse/threshold.py           15      0   100%
src/geneweaver/core/parse/utils.py               24      3    88%
src/geneweaver/core/parse/xlsx.py                88     26    70%
src/geneweaver/core/publication/__init__.py       0      0   100%
src/geneweaver/core/publication/pubmed.py        69      0   100%
src/geneweaver/core/render/__init__.py            0      0   100%
src/geneweaver/core/render/batch.py              19      0   100%
src/geneweaver/core/render/csv.py                10      0   100%
src/geneweaver/core/render/gene_list.py           4      0   100%
src/geneweaver/core/schema/__init__.py            7      0   100%
src/geneweaver/core/schema/batch.py              69      8    88%
src/geneweaver/core/schema/gene.py               45      2    96%
src/geneweaver/core/schema/geneset.py            76      0   100%
src/geneweaver/core/schema/group.py              14      0   100%
src/geneweaver/core/schema/legacy_api.py         28      0   100%
src/geneweaver/core/schema/messages.py           16      0   100%
src/geneweaver/core/schema/ontology.py           19      0   100%
src/geneweaver/core/schema/project.py            12      0   100%
src/geneweaver/core/schema/publication.py        14      0   100%
src/geneweaver/core/schema/score.py              12      1    92%
src/geneweaver/core/schema/stubgenerator.py       6      0   100%
src/geneweaver/core/schema/user.py               23      0   100%
src/geneweaver/core/types.py                      4      0   100%
src/geneweaver/core/utils.py                      4      0   100%
-----------------------------------------------------------------
TOTAL                                           994     43    96%
Coverage HTML written to dir htmlcov

Required test coverage of 90% reached. Total coverage: 95.67%

=========== 41330 passed, 2 skipped, 1 xfailed in 136.79s (0:02:16) ============

@bergsalex bergsalex merged commit 6426f87 into main Dec 8, 2023
9 checks passed
@bergsalex bergsalex deleted the G3-29-geneweaver-cli-client-excel-parsing-tool-2 branch May 29, 2024 20:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants