G3 134: The geneweaver.core enumerations should use builtin IntEnum and StrEnum

[bergsalex]

Switching to IntEnum for Integer based enum definitions to allow usage in FastAPI type annotations.

[github-actions]

Test Coverage Report

---------- coverage: platform linux, python 3.11.7-final-0 -----------
Name                                          Stmts   Miss  Cover
-----------------------------------------------------------------
src/geneweaver/core/__init__.py                   1      0   100%
src/geneweaver/core/config.py                     2      0   100%
src/geneweaver/core/config_class.py              10      0   100%
src/geneweaver/core/enum.py                     118      1    99%
src/geneweaver/core/exc.py                        4      0   100%
src/geneweaver/core/parse/__init__.py             0      0   100%
src/geneweaver/core/parse/batch.py              112      2    98%
src/geneweaver/core/parse/csv.py                 54      0   100%
src/geneweaver/core/parse/enum.py                 8      0   100%
src/geneweaver/core/parse/exceptions.py          21      0   100%
src/geneweaver/core/parse/numpy.py               45      0   100%
src/geneweaver/core/parse/score.py               41      0   100%
src/geneweaver/core/parse/threshold.py           15      0   100%
src/geneweaver/core/parse/utils.py               24      3    88%
src/geneweaver/core/parse/xlsx.py                88     26    70%
src/geneweaver/core/publication/__init__.py       0      0   100%
src/geneweaver/core/publication/pubmed.py        69      0   100%
src/geneweaver/core/render/__init__.py            0      0   100%
src/geneweaver/core/render/batch.py              19      0   100%
src/geneweaver/core/render/csv.py                10      0   100%
src/geneweaver/core/render/gene_list.py           4      0   100%
src/geneweaver/core/schema/__init__.py            7      0   100%
src/geneweaver/core/schema/batch.py              69      8    88%
src/geneweaver/core/schema/gene.py               45      2    96%
src/geneweaver/core/schema/geneset.py            76      0   100%
src/geneweaver/core/schema/group.py              14      0   100%
src/geneweaver/core/schema/legacy_api.py         28      0   100%
src/geneweaver/core/schema/messages.py           16      0   100%
src/geneweaver/core/schema/ontology.py           19      0   100%
src/geneweaver/core/schema/project.py            12      0   100%
src/geneweaver/core/schema/publication.py        14      0   100%
src/geneweaver/core/schema/score.py              12      1    92%
src/geneweaver/core/schema/stubgenerator.py       6      0   100%
src/geneweaver/core/schema/user.py               23      0   100%
src/geneweaver/core/types.py                      4      0   100%
src/geneweaver/core/utils.py                      4      0   100%
-----------------------------------------------------------------
TOTAL                                           994     43    96%
Coverage HTML written to dir htmlcov

Required test coverage of 90% reached. Total coverage: 95.67%

=========== 41336 passed, 2 skipped, 1 xfailed in 137.64s (0:02:17) ============

[francastell]

Just checking, are existing unit test cases covering these changes?

[bergsalex]

We don't have anything to check that these are IntEnums, but we have existing unit tests that use these enums.

[bergsalex]

@francastell, I added a test to verify that the IntEnum classes are in fact IntEnum classes.