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changed log folder structure to struc format
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@junilc
junilc committed Jan 9, 2020
1 parent 1406266 commit a8ad906
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Showing 2 changed files with 6 additions and 6 deletions.
8 changes: 4 additions & 4 deletions lib/ccf/functional_preprocessing/one_subject_job_submitter.py
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Original file line number Diff line number Diff line change
Expand Up @@ -114,12 +114,12 @@ def create_clean_data_script(self):
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'processing ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.linesep)
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + 'specs ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.linesep)
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'info' + os.path.sep + 'hcpls ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.linesep)
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subject_hcp.txt ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write('cp ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subject_hcp.txt ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write('cp ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'hcpls' + os.path.sep + 'hcpls2nii.log ')
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'hcpls' + os.path.sep + 'hcpls2nii.log ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write('find ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier)
script.write(' -maxdepth 1 -mindepth 1 \( -type d -not -path ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'T1w')
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4 changes: 2 additions & 2 deletions lib/ccf/one_subject_job_submitter.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -469,9 +469,9 @@ def create_clean_data_script(self):
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.linesep)
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'info' + os.path.sep + 'hcpls ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.linesep)
script.write('cp ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subject_hcp.txt ')
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subject_hcp.txt ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write('cp ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'hcpls' + os.path.sep + 'hcpls2nii.log ')
script.write('mv ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'subjects' + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'hcpls' + os.path.sep + 'hcpls2nii.log ')
script.write(self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'ProcessingInfo' + os.path.sep + 'processing' + os.linesep)
script.write('find ' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier)
script.write(' -not -path "' + self.working_directory_name + os.path.sep + self.subject + '_' + self.classifier + os.path.sep + 'T*w/*"')
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