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Modified code to show output of files in pathlib directory.
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Cameron Mattson committed Nov 21, 2024
1 parent 3c6cfc5 commit 66425a1
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2 changes: 1 addition & 1 deletion .github/workflows/python-app.yml
Original file line number Diff line number Diff line change
Expand Up @@ -39,5 +39,5 @@ jobs:
- name: Test with pytest
run: |
poetry run pytest
poetry run pytest -s
working-directory: ${{ github.workspace }}
4 changes: 4 additions & 0 deletions tests/test_correctness_pairwise_compare_manager.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,10 @@
"data/nf1_schwann_cell_painting_data/3.processing_features/data/bulk_profiles"
).resolve(strict=True)

for file in data_dir.iterdir():
if file.is_file():
print(file)

plate4df = pd.read_parquet(data_dir / "Plate_4_bulk_feature_selected.parquet")

plate4df["Metadata_siRNA"] = plate4df["Metadata_siRNA"].fillna("No siRNA")
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