try openssl install via conda

XPRESSyourself · Jun 29, 2024 · d9d896c · d9d896c
1 parent 8bb6f17
commit d9d896c
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/.github/workflows/dev-tests.yml b/.github/workflows/dev-tests.yml
@@ -31,19 +31,14 @@ jobs:
         python-version: ${{ matrix.python-version }}
         activate-environment: xpresspipe
 
-    - name: Install system dependencies
-      run: |
-        sudo apt-get update
-        sudo apt-get install -y libssl-dev
-
     - name: Install dependencies
       shell: bash -l {0}
       run: |
         conda clean --all
         conda env update --file requirements.yml --name xpresspipe
         conda activate xpresspipe
         pip install .
-        pip install codecov flake8
+        pip install codecov
 
     - name: Run test_arguments.py
       shell: bash -l {0}

diff --git a/requirements.yml b/requirements.yml
@@ -13,6 +13,7 @@ dependencies:
   - conda-forge::numpy>=1.16.0
   - conda-forge::scipy
   - conda-forge::r-base>=4.0.0
+  - conda-forge::openssl
   - fastp
   - umi_tools
   - STAR>=2.5.1